This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490607 (31 seq.)
>W1710935467
LOKM01000057
Gammaproteobacteria
Xanthomonas citri pv. malvacearum [LOKM]
2484
2409
-
Thr
CGT
[ENA]
¡û
>C171055257
CP017020
Gammaproteobacteria
Xanthomonas citri pv. malvacearum MSCT [CP017020]
3516392
3516317
-
Thr
CGT
-
¡û
>C171058825
CP017190
Gammaproteobacteria
Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 [CP017190]
4974039
4974114
+
Thr
CGT
-
¡û
>C027101
AM039952
Gammaproteobacteria
Xanthomonas euvesicatoria pv. vesicatoria str. 85-10 [AM039952]
1451062
1451137
+
Thr
CGT
[Ensembl]
¡û
>W141009545
AHIB01000034
Gammaproteobacteria
Xanthomonas citri pv. malvacearum str. GSPB1386 [AHIB]
51921
51996
+
Thr
CGT
[ENA]
¡û
>WENV180693699
OCZS011476107
[OCZS] soil metagenome; soil
195
120
-
Thr
CGT
[ENA]
¢þ
>W141149607
AWZR01000003
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
394240
394315
+
Thr
CGT
[ENA]
¡û
>W141207711
AZNZ01000008
Gammaproteobacteria
Pseudoxanthomonas sp. J31 [AZNZ]
89628
89553
-
Thr
CGT
[ENA]
¡û
>W141274347
JAAN01000015
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
52978
53053
+
Thr
CGT
[ENA]
¡û
>WENV183728802
PJTQ01000459
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
16683
16608
-
Thr
CGT
[ENA]
¢þ
>WENV170724593
LSQX01311435
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2475
2400
-
Thr
CGT
[ENA]
¢þ
>C181012789
CP013004
Gammaproteobacteria
Xanthomonas citri pv. malvacearum XcmH1005 [CP013004]
3733165
3733090
-
Thr
CGT
-
¡û
>C181047962
CP020967
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6164 [CP020967]
4099474
4099549
+
Thr
CGT
-
¡û
>C181076533
CP023155
Gammaproteobacteria
Xanthomonas citri pv. malvacearum AR81009 [CP023155]
3763698
3763623
-
Thr
CGT
-
¡û
>C181076585
CP023159
Gammaproteobacteria
Xanthomonas citri pv. malvacearum MS14003 [CP023159]
3541828
3541753
-
Thr
CGT
-
¡û
>C191008941
CP012048
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO18C2 [CP012048]
1459112
1459187
+
Thr
CGT
-
¡û
>C191009154
CP012057
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO98C12 [CP012057]
1459111
1459186
+
Thr
CGT
-
¡û
>C191009208
CP012060
Gammaproteobacteria
Xanthomonas sp. ISO98C4 [CP012060]
1459111
1459186
+
Thr
CGT
-
¡û
>C191009262
CP012063
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli ISO18C8 [CP012063]
1459112
1459187
+
Thr
CGT
-
¡û
>W1911498752
OCYS01000087
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP7430 [OCYS]
2537
2462
-
Thr
CGT
[ENA]
¡û
>W1911499199
OCZD01000055
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli CFBP6164 [OCZD]
14567
14492
-
Thr
CGT
[ENA]
¡û
>W1810403348
PYJH01000036
Gammaproteobacteria
Xanthomonas citri pv. malvacearum WHRI 5232 [PYJH]
52154
52229
+
Thr
CGT
[ENA]
¡û
>W1511489812
JWTF02000100
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 1811 [JWTF]
3135
3060
-
Thr
CGT
[ENA]
¡û
>W1511489935
JWTH02000160
Gammaproteobacteria
Xanthomonas phaseoli pv. phaseoli NCPPB 220 [JWTH]
2611
2536
-
Thr
CGT
[ENA]
¡û
>W1511546854
JZLN01000003
Gammaproteobacteria
Xanthomonas euvesicatoria 206 [JZLN]
1025
950
-
Thr
CGT
[ENA]
¡û
>WENV006594
AACY020176313
Marine microbial communities from Global Ocean Sampling (GOS)
1109
1184
+
Thr
CGT
[ENA]
>W121110742
ALIP01000113
Gammaproteobacteria
Pseudoxanthomonas sp. GW2 [ALIP]
8654
8579
-
Thr
CGT
[ENA]
¡û
>W1610207437
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
278004
277929
-
Thr
CGT
[ENA]
¡û
>W1710208071
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
278004
277929
-
Thr
CGT
[ENA]
¡û
>W1710541176
FNYC01000009
Gammaproteobacteria
Frateuria terrea [FNYC]
104304
104379
+
Thr
CGT
[ENA]
¡û
>W1710573396
FOXL01000005
Gammaproteobacteria
Frateuria terrea [FOXL]
104289
104364
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK