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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490886 (38 seq.)
>W1711120124
LUFR01000001
Gammaproteobacteria
Francisella hispaniensis FSC454 [LUFR]
82058
82133
+
Phe
GAA
[ENA]
¡û
>W1711955908
NBTB01000001
Gammaproteobacteria
Francisella tularensis [NBTB]
928673
928748
+
Phe
GAA
[ENA]
¡û
>C171058022
CP017153
Gammaproteobacteria
Francisella tularensis [CP017153]
822891
822966
+
Phe
GAA
-
¡û
>C171058060
CP017154
Gammaproteobacteria
Francisella tularensis [CP017154]
822891
822966
+
Phe
GAA
-
¡û
>C171058098
CP017155
Gammaproteobacteria
Francisella tularensis [CP017155]
822891
822966
+
Phe
GAA
-
¡û
>C171072621
CP018093
Gammaproteobacteria
Francisella hispaniensis FSC454 CCUG 58020 [CP018093]
830739
830814
+
Phe
GAA
-
¡û
>W131043850
AMPW01000024
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700075 [AMPW]
23208
23283
+
Phe
GAA
[ENA]
¡û
>W131110646
APKV01000005
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700069 [APKV]
369130
369205
+
Phe
GAA
[ENA]
¡û
>W131110678
APKW01000009
Gammaproteobacteria
Francisella tularensis subsp. tularensis 79201237 [APKW]
111780
111855
+
Phe
GAA
[ENA]
¡û
>W131110710
APKX01000004
Gammaproteobacteria
Francisella tularensis subsp. tularensis 80700075 [APKX]
441570
441645
+
Phe
GAA
[ENA]
¡û
>W131110742
APKY01000003
Gammaproteobacteria
Francisella tularensis subsp. tularensis 1378 [APKY]
441573
441648
+
Phe
GAA
[ENA]
¡û
>C009593
AM286280
Gammaproteobacteria
Francisella tularensis subsp. tularensis FSC198 FSC 198 [AM286280]
822844
822919
+
Phe
GAA
[Ensembl]
¡û
>C009705
AJ749949
Gammaproteobacteria
Francisella tularensis subsp. tularensis SCHU S4 [AJ749949]
822892
822967
+
Phe
GAA
[Ensembl]
¡û
>w023787
AAYE01000005
Gammaproteobacteria
Francisella tularensis subsp. tularensis FSC033 [AAYE]
176266
176343
+
Phe
GAA
[ENA]
¡û
>W08010740
ABRI01000011
Gammaproteobacteria
Francisella tularensis subsp. tularensis MA00-2987 [ABRI]
60881
60956
+
Phe
GAA
[ENA]
¡û
>WENV170151577
CEOD01009749
[CEOD] marine metagenome genome assembly TARA_036_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
27724
27799
+
Phe
GAA
[ENA]
¢þ
>W141569275
JIDR01000001
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. FTS-634/635 [JIDR]
819566
819641
+
Phe
GAA
[ENA]
¡û
>W141569313
JIDS01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. FSC043 [JIDS]
444149
444224
+
Phe
GAA
[ENA]
¡û
>W141569351
JIDT01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. SL [JIDT]
438800
438875
+
Phe
GAA
[ENA]
¡û
>W141569389
JIDU01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-643 [JIDU]
514165
514240
+
Phe
GAA
[ENA]
¡û
>W141569427
JIDV01000002
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-10492 [JIDV]
535099
535174
+
Phe
GAA
[ENA]
¡û
>W141569465
JIDW01000001
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. NR-28534 [JIDW]
819845
819920
+
Phe
GAA
[ENA]
¡û
>W141779936
JOOR01000004
Gammaproteobacteria
Francisella tularensis [JOOR]
441273
441348
+
Phe
GAA
[ENA]
¡û
>W141780051
JOOU01000014
Gammaproteobacteria
Francisella tularensis [JOOU]
251371
251296
-
Phe
GAA
[ENA]
¡û
>W141780104
JOOV01000027
Gammaproteobacteria
Francisella tularensis [JOOV]
111389
111464
+
Phe
GAA
[ENA]
¡û
>W141789965
JOUF01000016
Gammaproteobacteria
Francisella tularensis [JOUF]
22917
22992
+
Phe
GAA
[ENA]
¡û
>W141790401
JOVO01000014
Gammaproteobacteria
Francisella tularensis [JOVO]
250865
250790
-
Phe
GAA
[ENA]
¡û
>W141803350
JPGP01000023
Gammaproteobacteria
Francisella tularensis [JPGP]
24133
24208
+
Phe
GAA
[ENA]
¡û
>W1910725988
MGPA01000024
Gammaproteobacteria
Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14 [MGPA]
27754
27829
+
Phe
GAA
[ENA]
¡û
>W1910729966
MHBC01000013
Gammaproteobacteria
Legionellales bacterium RIFCSPHIGHO2_12_FULL_37_14 [MHBC]
15532
15457
-
Phe
GAA
[ENA]
¡û
>C151065752
CP010290
Gammaproteobacteria
Francisella tularensis subsp. tularensis SCHU S4 SHU-S4 [CP010290]
1884908
1884833
-
Phe
GAA
[Ensembl]
¡û
>C151069708
CP010446
Gammaproteobacteria
Francisella tularensis subsp. tularensis str. SCHU S4 substr. [CP010446]
822778
822853
+
Phe
GAA
[Ensembl]
¡û
>C151094489
CP012372
Gammaproteobacteria
Francisella tularensis subsp. tularensis MA00-2987 [CP012372]
822755
822830
+
Phe
GAA
-
¡û
>C10106979
CP001633
Gammaproteobacteria
Francisella tularensis subsp. tularensis NE061598 [CP001633]
822948
823023
+
Phe
GAA
[Ensembl]
¡û
>C121004616
CP003048
Gammaproteobacteria
Francisella tularensis subsp. tularensis TIGB03 [CP003048]
898798
898873
+
Phe
GAA
[Ensembl]
¡û
>C121004654
CP003049
Gammaproteobacteria
Francisella tularensis subsp. tularensis TI0902 [CP003049]
822891
822966
+
Phe
GAA
[Ensembl]
¡û
>C161024559
CP010287
Gammaproteobacteria
Francisella tularensis subsp. tularensis Scherm [CP010287]
578688
578763
+
Phe
GAA
[Ensembl]
¡û
>W1610931440
LUFR01000001
Gammaproteobacteria
Francisella hispaniensis FSC454 [LUFR]
82058
82133
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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