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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490974 (24 seq.)
>A171000027
AM774415
Euryarchaeota
Halobacterium salinarum R1 DSM 671 [AM774415]
1488514
1488444
-
Gly
CCC
-
¡û
>A171001113
CP001860
Euryarchaeota
Haloterrigena turkmenica DSM 5511 [CP001860]
497022
497092
+
Gly
CCC
-
¡û
>A171003190
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
623210
623140
-
Gly
CCC
-
¡û
>A171007452
LN831302
Euryarchaeota
Halobacterium hubeiense JI20-1 [LN831302]
2110628
2110557
-
Gly
CCC
-
¡û
>WENV180318785
OBKM01010268
[OBKM] metagenome; water
1647
1577
-
Gly
CCC
[ENA]
¢þ
>At0834
AE004437
Euryarchaeota
Halobacterium salinarum NRC-1; ATCC 700922 [AE004437]
1499274
1499204
-
Gly
CCC
[Ensembl]
¡û
>WENV170682080
LFFM01005828
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
2793
2865
+
Gly
CCC
[ENA]
¢þ
>WENV170701853
LKMJ01000061
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
58089
58017
-
Gly
CCC
[ENA]
¢þ
>W1910229908
FOIC01000008
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
29464
29394
-
Gly
CCC
[ENA]
¡û
>W1910340552
FTNR01000010
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
27320
27392
+
Gly
CCC
[ENA]
¡û
>W1910572725
JNCS01000010
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
50885
50955
+
Gly
CCC
[ENA]
¡û
>W1910583026
JXAN01000097
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
12006
12076
+
Gly
CCC
[ENA]
¡û
>W1610005391
AJVG01000028
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
7499
7429
-
Gly
CCC
[ENA]
¡û
>W1610012219
AOID01000048
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
153044
152973
-
Gly
CCC
[ENA]
¡û
>W1610012281
AOII01000019
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
8094
8164
+
Gly
CCC
[ENA]
¡û
>W1610012355
AOIJ01000057
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
37446
37376
-
Gly
CCC
[ENA]
¡û
>W1610012404
AOIK01000037
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
37852
37782
-
Gly
CCC
[ENA]
¡û
>W1610012439
AOIL01000049
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
94123
94193
+
Gly
CCC
[ENA]
¡û
>W1610012594
AOIP01000015
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
483789
483719
-
Gly
CCC
[ENA]
¡û
>W1610085074
CEML01000001
Euryarchaeota
Halobacterium hubeiense JI20-4 [CEML]
869504
869433
-
Gly
CCC
[ENA]
¡û
>W1610085101
CEMN01000001
Euryarchaeota
Halobacterium hubeiense JI20-3 [CEMN]
590129
590200
+
Gly
CCC
[ENA]
¡û
>W1610085140
CEMO01000001
Euryarchaeota
Halobacterium hubeiense JI20-2 [CEMO]
632861
632932
+
Gly
CCC
[ENA]
¡û
>W1610085179
CEMP01000001
Euryarchaeota
Halobacterium hubeiense JI20-6 [CEMP]
631965
632036
+
Gly
CCC
[ENA]
¡û
>W1610085273
CEMR01000001
Euryarchaeota
Halobacterium hubeiense JI20-5 [CEMR]
869581
869510
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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