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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491020 (118 seq.)
>W1710862886
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
422193
422122
-
Cys
GCA
[ENA]
¡û
>W1710864170
LMFR01000002
Actinomycetota
Microbacterium sp. Root53 [LMFR]
75816
75745
-
Cys
GCA
[ENA]
¡û
>W1710923737
LOBU02000019
Actinomycetota
Amycolatopsis regifaucium [LOBU]
489814
489885
+
Cys
GCA
[ENA]
¡û
>W131054699
ANAY01000015
Actinomycetota
Nocardiopsis kunsanensis DSM 44524 [ANAY]
135610
135681
+
Cys
GCA
[ENA]
¡û
>W131055003
ANBD01000162
Actinomycetota
Nocardiopsis alkaliphila YIM 80379 [ANBD]
36919
36846
-
Cys
GCA
[ENA]
¡û
>W1710996478
LQBL01000028
Actinomycetota
Serinicoccus chungangensis [LQBL]
14220
14149
-
Cys
GCA
[ENA]
¡û
>W1711004789
LQMT02000007
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
250481
250552
+
Cys
GCA
[ENA]
¡û
>W131064617
ANMG01000038
Actinomycetota
Amycolatopsis azurea DSM 43854 [ANMG]
121129
121200
+
Cys
GCA
[ENA]
¡û
>W131091965
AOHO01000078
Actinomycetota
Amycolatopsis decaplanina DSM 44594 [AOHO]
77835
77906
+
Cys
GCA
[ENA]
¡û
>W131100479
AOUO01000298
Actinomycetota
Amycolatopsis vancoresmycina DSM 44592 [AOUO]
3444
3515
+
Cys
GCA
[ENA]
¡û
>W131158772
AQUL01000002
Actinomycetota
Amycolatopsis methanolica 239 [AQUL]
112415
112344
-
Cys
GCA
[ENA]
¡û
>W131159344
AQUZ01000001
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
46448
46521
+
Cys
GCA
[ENA]
¡û
>W131159347
AQUZ01000001
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
48576
48649
+
Cys
GCA
[ENA]
¡û
>W131164060
ARAF01000002
Actinomycetota
Amycolatopsis alba DSM 44262 [ARAF]
5346456
5346527
+
Cys
GCA
[ENA]
¡û
>W131165058
ARBH01000004
Actinomycetota
Amycolatopsis balhimycina FH 1894 [ARBH]
853539
853610
+
Cys
GCA
[ENA]
¡û
>W131179357
ARMI01000041
Actinomycetota
Nocardiopsis sp. CNS-639 CNS639 [ARMI]
110871
110944
+
Cys
GCA
[ENA]
¡û
>W131181752
ARPK01000001
Actinomycetota
Amycolatopsis benzoatilytica AK 16/65 [ARPK]
3272817
3272888
+
Cys
GCA
[ENA]
¡û
>W1711183505
LWLB01000032
Actinomycetota
Nocardiopsis sp. TSRI0078 [LWLB]
151241
151168
-
Cys
GCA
[ENA]
¡û
>W1711190834
LWSF01000004
Actinomycetota
Amycolatopsis sp. M39 [LWSF]
839166
839237
+
Cys
GCA
[ENA]
¡û
>W131191597
ASJB01000044
Actinomycetota
Amycolatopsis orientalis DSM 40040 = KCTC 9412 [ASJB]
150558
150487
-
Cys
GCA
[ENA]
¡û
>W131202801
ASXG01000126
Actinomycetota
Amycolatopsis orientalis DSM 43388 [ASXG]
83732
83803
+
Cys
GCA
[ENA]
¡û
>W131202856
ASXH01000125
Actinomycetota
Amycolatopsis orientalis DSM 46075 [ASXH]
47840
47911
+
Cys
GCA
[ENA]
¡û
>W1711662728
MQUQ01000008
Actinomycetota
Amycolatopsis coloradensis [MQUQ]
211820
211891
+
Cys
GCA
[ENA]
¡û
>W1711724824
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
33810
33881
+
Cys
GCA
[ENA]
¡û
>W1711724829
MTQN01000009
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
26591
26520
-
Cys
GCA
[ENA]
¡û
>W1711749224
MUMI01000244
Actinomycetota
Amycolatopsis kentuckyensis [MUMI]
3719
3790
+
Cys
GCA
[ENA]
¡û
>W1711749313
MUMK01000095
Actinomycetota
Amycolatopsis pretoriensis [MUMK]
25172
25243
+
Cys
GCA
[ENA]
¡û
>W1711765442
MUXN01000027
Actinomycetota
Amycolatopsis azurea DSM 43854 [MUXN]
400349
400420
+
Cys
GCA
[ENA]
¡û
>C171046296
CP016174
Actinomycetota
Amycolatopsis orientalis B-37 [CP016174]
5212243
5212314
+
Cys
GCA
-
¡û
>WENV180363768
OBNZ01005779
[OBNZ] marine metagenome; ENVO:00002010
438
367
-
Cys
GCA
[ENA]
¢þ
>WENV180395245
OBPT01004913
[OBPT] marine metagenome; ENVO:00002010 seawater
2557
2486
-
Cys
GCA
[ENA]
¢þ
>WENV181155384
OEID01130678
[OEID] soil metagenome; soil
1
72
+
Cys
GCA
[ENA]
¢þ
>WENV181171498
OEIV010250638
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
71
142
+
Cys
GCA
[ENA]
¢þ
>WENV181295247
OFHI01007623
[OFHI] soil metagenome; Clay
290
219
-
Cys
GCA
[ENA]
¢þ
>WENV181297526
OFHK01061253
[OFHK] soil metagenome; Clay
64
135
+
Cys
GCA
[ENA]
¢þ
>WENV181298079
OFHL01024561
[OFHL] soil metagenome; Clay
556
485
-
Cys
GCA
[ENA]
¢þ
>WENV181416332
OGCL01074350
[OGCL] hot springs metagenome; Hot spring water
230
159
-
Cys
GCA
[ENA]
¢þ
>W141151728
AXBH01000003
Actinomycetota
Amycolatopsis thermoflava N1165 [AXBH]
2384741
2384812
+
Cys
GCA
[ENA]
¡û
>WENV170570988
FLOH01000048
[FLOH] marine metagenome; water
97786
97715
-
Cys
GCA
[ENA]
¢þ
>WENV170627023
FUWD013230765
[FUWD] metagenome; unknown
4046
3975
-
Cys
GCA
[ENA]
¢þ
>WENV170627498
FUWD013232959
[FUWD] metagenome; unknown
28077
28004
-
Cys
GCA
[ENA]
¢þ
>WENV170629367
FUWD013268390
[FUWD] metagenome; unknown
100265
100336
+
Cys
GCA
[ENA]
¢þ
>W141451897
JFBM01000005
Actinomycetota
Amycolatopsis lurida NRRL 2430 [JFBM]
135127
135198
+
Cys
GCA
[ENA]
¡û
>C181016797
CP015163
Actinomycetota
Amycolatopsis albispora WP1 [CP015163]
3298607
3298536
-
Cys
GCA
-
¡û
>C181028469
CP017780
Actinomycetota
Amycolatopsis sp. BJA-103 [CP017780]
2342145
2342074
-
Cys
GCA
-
¡û
>C181107776
CP024894
Actinomycetota
Amycolatopsis sp. AA4 [CP024894]
4678403
4678474
+
Cys
GCA
-
¡û
>C191164676
CP039291
Actinomycetota
Cellulomonas shaoxiangyii Z28 [CP039291]
1979684
1979755
+
Cys
GCA
-
¡û
>C191212903
LR134501
Actinomycetota
Nocardiopsis dassonvillei NCTC10488 [LR134501]
6267628
6267556
-
Cys
GCA
-
¡û
>W141711993
JMQG01000018
Actinomycetota
Amycolatopsis mediterranei [JMQG]
7629
7558
-
Cys
GCA
[ENA]
¡û
>W141712139
JMQI01000076
Actinomycetota
Amycolatopsis rifamycinica [JMQI]
63047
63118
+
Cys
GCA
[ENA]
¡û
>W141712198
JMQJ01000092
Actinomycetota
Amycolatopsis mediterranei [JMQJ]
9313
9242
-
Cys
GCA
[ENA]
¡û
>W09109266
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
73282
73355
+
Cys
GCA
[ENA]
¡û
>W09109270
ABUC01000008
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
55033
54960
-
Cys
GCA
[ENA]
¡û
>W09120724
ACEV01000052
Actinomycetota
Streptomyces sp. AA4 [ACEV]
67932
68003
+
Cys
GCA
[ENA]
¡û
>W141758986
JNYZ01000025
Actinomycetota
Amycolatopsis jejuensis [JNYZ]
117942
118013
+
Cys
GCA
[ENA]
¡û
>W141773726
JOIQ01000017
Actinomycetota
Streptomyces sp. NRRL F-3213 [JOIQ]
157258
157187
-
Cys
GCA
[ENA]
¡û
>W141806116
JPLW01000002
Actinomycetota
Amycolatopsis sp. MJM2582 [JPLW]
1409218
1409289
+
Cys
GCA
[ENA]
¡û
>C09101579
CP001618
Actinomycetota
Beutenbergia cavernae DSM 12333 [CP001618]
2256399
2256328
-
Cys
GCA
[Ensembl]
¡û
>C141001878
CP003777
Actinomycetota
Amycolatopsis mediterranei RB [CP003777]
5917452
5917523
+
Cys
GCA
[Ensembl]
¡û
>W1910657610
MASU01000008
Actinomycetota
Prauserella flavalba YIM 121212 [MASU]
23852
23781
-
Cys
GCA
[ENA]
¡û
>W1910657666
MASV01000009
Actinomycetota
Prauserella coralliicola DSM 45821 [MASV]
868650
868721
+
Cys
GCA
[ENA]
¡û
>W1910832035
MYFP01000002
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
19102
19173
+
Cys
GCA
[ENA]
¡û
>W1911071559
NMQT01000114
Actinomycetota
Amycolatopsis thailandensis JCM 16380 [NMQT]
14071
14000
-
Cys
GCA
[ENA]
¡û
>W1911071609
NMQU01000095
Actinomycetota
Amycolatopsis alba DSM 44262 [NMQU]
8187
8116
-
Cys
GCA
[ENA]
¡û
>W1911075194
NMUK01000067
Actinomycetota
Amycolatopsis sp. KNN50.9b [NMUK]
135869
135798
-
Cys
GCA
[ENA]
¡û
>W1911075230
NMUL01000006
Actinomycetota
Amycolatopsis vastitatis H5 [NMUL]
3816
3745
-
Cys
GCA
[ENA]
¡û
>W1911676658
QHHU01000040
Actinomycetota
Amycolatopsis balhimycina DSM 5908 [QHHU]
102566
102495
-
Cys
GCA
[ENA]
¡û
>W1911676785
QHHW01000047
Actinomycetota
Amycolatopsis sp. WAC 01375 [QHHW]
49102
49031
-
Cys
GCA
[ENA]
¡û
>W1911676841
QHHX01000013
Actinomycetota
Amycolatopsis sp. WAC 01416 [QHHX]
217130
217201
+
Cys
GCA
[ENA]
¡û
>W1911678764
QHJJ01000008
Actinomycetota
Amycolatopsis sp. WAC 04182 [QHJJ]
416998
416927
-
Cys
GCA
[ENA]
¡û
>W1911678808
QHJK01000008
Actinomycetota
Amycolatopsis sp. WAC 04197 [QHJK]
141633
141704
+
Cys
GCA
[ENA]
¡û
>W1911678920
QHJM01000016
Actinomycetota
Streptomyces sp. WAC 05977 [QHJM]
80359
80430
+
Cys
GCA
[ENA]
¡û
>W1911679716
QHKL01000010
Actinomycetota
Amycolatopsis sp. WAC 01376 [QHKL]
10908
10837
-
Cys
GCA
[ENA]
¡û
>W1911814697
QZFV01000069
Actinomycetota
Amycolatopsis panacis YIM PH 21725 [QZFV]
11018
10947
-
Cys
GCA
[ENA]
¡û
>W1810058359
PDJK01000001
Actinomycetota
Amycolatopsis sulphurea DSM 46092 [PDJK]
512505
512434
-
Cys
GCA
[ENA]
¡û
>W1810173292
PJMY01000003
Actinomycetota
Amycolatopsis niigatensis DSM 45165 [PJMY]
6916424
6916353
-
Cys
GCA
[ENA]
¡û
>W1810237688
PPHG01000088
Actinomycetota
Amycolatopsis sp. CA-128772 [PPHG]
44104
44175
+
Cys
GCA
[ENA]
¡û
>W1810254794
PQHW01000200
Actinomycetota
Amycolatopsis thermalba NRRL B-24845 [PQHW]
2241
2312
+
Cys
GCA
[ENA]
¡û
>W1810254846
PQHX01000170
Actinomycetota
Amycolatopsis thermalba 50.9b [PQHX]
2269
2340
+
Cys
GCA
[ENA]
¡û
>W1810254898
PQHY01000159
Actinomycetota
Amycolatopsis ruanii 49.3e [PQHY]
487
416
-
Cys
GCA
[ENA]
¡û
>W1810255000
PQIA01000171
Actinomycetota
Amycolatopsis circi DSM 45561 [PQIA]
1225
1296
+
Cys
GCA
[ENA]
¡û
>W1810296240
PTJD01000005
Actinomycetota
Kineococcus xinjiangensis DSM 22857 [PTJD]
46409
46338
-
Cys
GCA
[ENA]
¡û
>W1810357006
PVNI01000022
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
111592
111663
+
Cys
GCA
[ENA]
¡û
>W1810592366
QFXK01000026
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
124582
124653
+
Cys
GCA
[ENA]
¡û
>W1810592369
QFXK01000026
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
130900
130971
+
Cys
GCA
[ENA]
¡û
>W1810595115
QGDQ01000012
Actinomycetota
Quadrisphaera granulorum DSM 44889 [QGDQ]
69738
69809
+
Cys
GCA
[ENA]
¡û
>C151018959
CP007219
Actinomycetota
Amycolatopsis lurida [CP007219]
1671666
1671737
+
Cys
GCA
-
¡û
>C151040873
CP008953
Actinomycetota
Amycolatopsis japonica MG417-CF17 [CP008953]
3485513
3485442
-
Cys
GCA
[Ensembl]
¡û
>C151044239
CP009110
Actinomycetota
Amycolatopsis methanolica 239 [CP009110]
2961305
2961234
-
Cys
GCA
[Ensembl]
¡û
>SRA1024185
SRR035084.268151
454 Sequencing (SRP001805)
170
97
-
Cys
GCA
[SRA]
>C10100514
CP002000
Actinomycetota
Amycolatopsis mediterranei U32 [CP002000]
5907547
5907618
+
Cys
GCA
[Ensembl]
¡û
>C10107955
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3597039
3597112
+
Cys
GCA
[Ensembl]
¡û
>C10107977
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
3578789
3578716
-
Cys
GCA
[Ensembl]
¡û
>C10112152
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
2810541
2810612
+
Cys
GCA
[Ensembl]
¡û
>C11100905
CP002896
Actinomycetota
Amycolatopsis mediterranei S699 [CP002896]
5907590
5907661
+
Cys
GCA
-
¡û
>W1511509622
JXRD01000022
Actinomycetota
Amycolatopsis orientalis B-37 [JXRD]
253717
253646
-
Cys
GCA
[ENA]
¡û
>W11176338
AFWY01000006
Actinomycetota
Amycolatopsis sp. ATCC 39116 [AFWY]
575484
575555
+
Cys
GCA
[ENA]
¡û
>C121015466
CP003729
Actinomycetota
Amycolatopsis mediterranei S699 [CP003729]
5917517
5917588
+
Cys
GCA
-
¡û
>W1610052697
BBID01000186
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
4527
4454
-
Cys
GCA
[ENA]
¡û
>W1610067756
BCQU01000013
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
86321
86394
+
Cys
GCA
[ENA]
¡û
>C131003623
CP003410
Actinomycetota
Amycolatopsis keratiniphila HCCB10007 [CP003410]
4873225
4873296
+
Cys
GCA
[Ensembl]
¡û
>W1610725232
LMER01000014
Actinomycetota
Angustibacter sp. Root456 [LMER]
422193
422122
-
Cys
GCA
[ENA]
¡û
>W1610726516
LMFR01000002
Actinomycetota
Microbacterium sp. Root53 [LMFR]
75816
75745
-
Cys
GCA
[ENA]
¡û
>W1610781209
LOBU01000007
Actinomycetota
Amycolatopsis regifaucium [LOBU]
198831
198760
-
Cys
GCA
[ENA]
¡û
>W1610855409
LQMT01000022
Actinomycetota
Amycolatopsis keratiniphila subsp. keratiniphila [LQMT]
44536
44465
-
Cys
GCA
[ENA]
¡û
>W1710049075
BBID01000186
Actinomycetota
Kineosporia rhamnosa JCM 9954 [BBID]
4527
4454
-
Cys
GCA
[ENA]
¡û
>W1710065129
BCQU01000013
Actinomycetota
Actinomadura rubrobrunea NBRC 15275 [BCQU]
86321
86394
+
Cys
GCA
[ENA]
¡û
>W1710530120
FNON01000001
Actinomycetota
Amycolatopsis xylanica [FNON]
335983
335912
-
Cys
GCA
[ENA]
¡û
>W1710535497
FNSO01000004
Actinomycetota
Amycolatopsis tolypomycina [FNSO]
2774497
2774426
-
Cys
GCA
[ENA]
¡û
>W1710536148
FNTA01000002
Actinomycetota
Amycolatopsis lurida [FNTA]
310667
310596
-
Cys
GCA
[ENA]
¡û
>W1710538186
FNUJ01000002
Actinomycetota
Amycolatopsis pretoriensis [FNUJ]
205922
205993
+
Cys
GCA
[ENA]
¡û
>W1710549036
FOEF01000020
Actinomycetota
Amycolatopsis saalfeldensis [FOEF]
126927
126856
-
Cys
GCA
[ENA]
¡û
>W1710556183
FOKA01000002
Actinomycetota
Cellulomonas marina [FOKA]
207217
207146
-
Cys
GCA
[ENA]
¡û
>W1710563390
FOPQ01000006
Actinomycetota
Amycolatopsis regifaucium [FOPQ]
508402
508473
+
Cys
GCA
[ENA]
¡û
>W1710565924
FORP01000040
Actinomycetota
Amycolatopsis sacchari [FORP]
1316
1387
+
Cys
GCA
[ENA]
¡û
>W1710571677
FOWC01000008
Actinomycetota
Amycolatopsis rubida [FOWC]
38984
38913
-
Cys
GCA
[ENA]
¡û
>W1710628073
JPRA01000013
Actinomycetota
Amycolatopsis mediterranei [JPRA]
94985
95056
+
Cys
GCA
[ENA]
¡û
>W1710773654
LIWC01000001
Actinomycetota
Amycolatopsis sp. CB00013 [LIWC]
1574441
1574512
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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