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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491021 (31 seq.)
>W1710996612
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1717894
1717819
-
Glu
TTC
[ENA]
¡û
>W1710996614
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1717640
1717565
-
Glu
TTC
[ENA]
¡û
>W131186684
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
195631
195706
+
Glu
TTC
[ENA]
¡û
>W131186686
ARWI01000001
Gammaproteobacteria
Thiomicrorhabdus sp. Kp2 Kp2 [ARWI]
195904
195979
+
Glu
TTC
[ENA]
¡û
>WENV180210338
OBAL01219986
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
130
55
-
Glu
TTC
[ENA]
¢þ
>W141170927
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
525264
525339
+
Glu
TTC
[ENA]
¡û
>W141170929
AXZC01000004
Gammaproteobacteria
Thiomicrorhabdus chilensis DSM 12352 [AXZC]
525520
525595
+
Glu
TTC
[ENA]
¡û
>WENV170779617
LZQQ01000367
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
4421
4346
-
Glu
TTC
[ENA]
¢þ
>WENV170779724
LZQR01000090
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
2832
2907
+
Glu
TTC
[ENA]
¢þ
>C191004404
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
1394625
1394550
-
Glu
TTC
-
¡û
>C191004406
AP018722
Gammaproteobacteria
Thiomicrorhabdus aquaedulcis HaS4 [AP018722]
1394357
1394282
-
Glu
TTC
-
¡û
>C191011659
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1566861
1566936
+
Glu
TTC
-
¡û
>C191011661
CP014470
Gammaproteobacteria
Thiomicrospira sp. S5 [CP014470]
1567115
1567190
+
Glu
TTC
-
¡û
>C191098470
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1480818
1480743
-
Glu
TTC
-
¡û
>C191098472
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1480448
1480373
-
Glu
TTC
-
¡û
>C191098474
CP033040
Gammaproteobacteria
Thiomicrorhabdus indica 13-15A [CP033040]
1480069
1479994
-
Glu
TTC
-
¡û
>C191134056
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1436824
1436749
-
Glu
TTC
-
¡û
>C191134058
CP035033
Gammaproteobacteria
Hydrogenovibrio thermophilus JR-2 [CP035033]
1436570
1436495
-
Glu
TTC
-
¡û
>C191180177
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1214853
1214778
-
Glu
TTC
-
¡û
>C191180179
CP040602
Gammaproteobacteria
Thiomicrorhabdus sediminis G1 [CP040602]
1214600
1214525
-
Glu
TTC
-
¡û
>W141700067
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
447149
447074
-
Glu
TTC
[ENA]
¡û
>W141700069
JMIU01000001
Gammaproteobacteria
Hydrogenovibrio marinus [JMIU]
446896
446821
-
Glu
TTC
[ENA]
¡û
>W141776959
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
643597
643522
-
Glu
TTC
[ENA]
¡û
>W141776961
JOMK01000001
Gammaproteobacteria
Hydrogenovibrio sp. MA2-6 MA2-6 [JOMK]
643343
643268
-
Glu
TTC
[ENA]
¡û
>W141777005
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
809243
809168
-
Glu
TTC
[ENA]
¡û
>W141777007
JOML01000002
Gammaproteobacteria
Hydrogenovibrio marinus DSM 11271 [JOML]
808990
808915
-
Glu
TTC
[ENA]
¡û
>W1610851269
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1717894
1717819
-
Glu
TTC
[ENA]
¡û
>W1610851271
LQBO01000001
Gammaproteobacteria
Thiomicrospira sp. XS5 [LQBO]
1717640
1717565
-
Glu
TTC
[ENA]
¡û
>WENV078122
AAFY01024417
Fossil microbial community from Whale Fall (Santa Cruz Basin)
36
113
+
Glu
TTC
[ENA]
>WENV078124
AAFY01024417
Fossil microbial community from Whale Fall (Santa Cruz Basin)
289
366
+
Glu
TTC
[ENA]
>WENV078126
AAFY01024417
Fossil microbial community from Whale Fall (Santa Cruz Basin)
542
619
+
Glu
TTC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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