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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.491408 (39 seq.)
>W131158643
AQUI01000002
Actinomycetota
Actinopolyspora halophila DSM 43834 [AQUI]
4585089
4585162
+
Gln
TTG
[ENA]
¡û
>W131163107
AQZN01000005
Actinomycetota
Actinopolyspora mortivallis DSM 44261 [AQZN]
78184
78111
-
Gln
TTG
[ENA]
¡û
>W131222543
AUBJ01000001
Actinomycetota
Actinoalloteichus caeruleus DSM 43889 [AUBJ]
529777
529848
+
Gln
TTG
[ENA]
¡û
>W1711502627
MKSW01000013
Actinomycetota
Actinobacteria bacterium 69-20 [MKSW]
32677
32748
+
Gln
TTG
[ENA]
¡û
>C171033891
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
756994
756923
-
Gln
TTG
-
¡û
>C171045499
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
774812
774741
-
Gln
TTG
-
¡û
>C171045546
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
789655
789584
-
Gln
TTG
-
¡û
>C021643
AM420293
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 [AM420293]
915486
915413
-
Gln
TTG
[Ensembl]
¡û
>WENV181401485
OFTX01000397
[OFTX] sludge metagenome; sludge
10662
10591
-
Gln
TTG
[ENA]
¢þ
>WENV181609401
OGLN01026718
[OGLN] metagenome; Human gut stool
246
175
-
Gln
TTG
[ENA]
¢þ
>WENV181634878
OGMW01035596
[OGMW] metagenome; Human gut stool
487
558
+
Gln
TTG
[ENA]
¢þ
>WENV181641991
OGNF01045762
[OGNF] metagenome; Human gut stool
734
663
-
Gln
TTG
[ENA]
¢þ
>W141185593
AYJW01000046
Actinomycetota
Saccharopolyspora rectivirgula DSM 43747 [AYJW]
9056
8983
-
Gln
TTG
[ENA]
¡û
>WENV170648307
JRHI01000141
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
44742
44671
-
Gln
TTG
[ENA]
¢þ
>C181067279
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
743154
743083
-
Gln
TTG
-
¡û
>C181072155
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
4311867
4311938
+
Gln
TTG
-
¡û
>C181124918
CP025990
Actinomycetota
Actinoalloteichus sp. AHMU CJ021 [CP025990]
1956565
1956636
+
Gln
TTG
-
¡û
>W141563914
JIAI01000014
Actinomycetota
Pseudonocardia acaciae DSM 45401 [JIAI]
129892
129963
+
Gln
TTG
[ENA]
¡û
>W141754554
JNVU01000012
Actinomycetota
Saccharopolyspora rectivirgula [JNVU]
246589
246516
-
Gln
TTG
[ENA]
¡û
>W141758815
JNYW01001881
Actinomycetota
Saccharopolyspora phatthalungensis [JNYW]
3682
3755
+
Gln
TTG
[ENA]
¡û
>W141766188
JODV01000001
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JODV]
531041
531112
+
Gln
TTG
[ENA]
¡û
>W1910179059
BJFL01000005
Actinomycetota
Gandjariella thermophila UICC B-83 SL3-2-4 [BJFL]
41128
41057
-
Gln
TTG
[ENA]
¡û
>W1911572291
PDBV01000001
Actinomycetota
Saccharopolyspora erythraea NRRL 2338 DSM 40517 [PDBV]
1295732
1295661
-
Gln
TTG
[ENA]
¡û
>W1810173475
PJNB01000001
Actinomycetota
Saccharopolyspora spinosa DSM 44228 [PJNB]
1804360
1804289
-
Gln
TTG
[ENA]
¡û
>W1810363888
PVSR01000009
Actinomycetota
Actinopolyspora mortivallis M5A [PVSR]
1570
1641
+
Gln
TTG
[ENA]
¡û
>W1810504379
QBKV01000002
Actinomycetota
Saccharopolyspora hirsuta DSM 44795 [QBKV]
970714
970643
-
Gln
TTG
[ENA]
¡û
>W1810759019
QPJC01000013
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
33001
32930
-
Gln
TTG
[ENA]
¡û
>W1511307035
JPMV01000012
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
191258
191185
-
Gln
TTG
[ENA]
¡û
>W11152499
AEYC01000096
Actinomycetota
Saccharopolyspora spinosa NRRL 18395 [AEYC]
50498
50571
+
Gln
TTG
[ENA]
¡û
>W121021608
AGVX02000194
Actinomycetota
Actinoalloteichus spitiensis RMV-1378 [AGVX]
11131
11202
+
Gln
TTG
[ENA]
¡û
>W1710520266
FNFM01000001
Actinomycetota
Actinopolyspora mzabensis [FNFM]
223402
223329
-
Gln
TTG
[ENA]
¡û
>W1710525601
FNJR01000002
Actinomycetota
Actinopolyspora xinjiangensis [FNJR]
283731
283658
-
Gln
TTG
[ENA]
¡û
>W1710526791
FNKO01000002
Actinomycetota
Actinopolyspora saharensis [FNKO]
2270180
2270107
-
Gln
TTG
[ENA]
¡û
>W1710529981
FNOK01000012
Actinomycetota
Saccharopolyspora shandongensis [FNOK]
79051
78978
-
Gln
TTG
[ENA]
¡û
>W1710559877
FOMZ01000001
Actinomycetota
Actinopolyspora alba [FOMZ]
399269
399342
+
Gln
TTG
[ENA]
¡û
>W1710569684
FOUP01000010
Actinomycetota
Saccharopolyspora antimicrobica [FOUP]
24205
24278
+
Gln
TTG
[ENA]
¡û
>W1710570171
FOUY01000077
Actinomycetota
Pseudonocardia ammonioxydans [FOUY]
12932
13005
+
Gln
TTG
[ENA]
¡û
>W1710576274
FOZX01000002
Actinomycetota
Saccharopolyspora flava [FOZX]
396349
396422
+
Gln
TTG
[ENA]
¡û
>W1710577354
FPAT01000009
Actinomycetota
Actinopolyspora righensis [FPAT]
192331
192258
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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