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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49158 (74 seq.)
>W1710791917
LJOD01000018
Bacteroidota
Chryseobacterium indologenes [LJOD]
81574
81489
-
Ser
GCT
[ENA]
¡û
>W1711073329
LSIL01000159
Bacteroidota
Chryseobacterium sp. CCH4-E10 [LSIL]
19029
19114
+
Ser
GCT
[ENA]
¡û
>W1711132242
LUVZ01000047
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
159013
159098
+
Ser
GCT
[ENA]
¡û
>W1711314245
MAUH01000007
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
86416
86501
+
Ser
GCT
[ENA]
¡û
>W1711318343
MAYF01000323
Bacteroidota
Chryseobacterium contaminans [MAYF]
85211
85296
+
Ser
GCT
[ENA]
¡û
>W1711318389
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
51600
51515
-
Ser
GCT
[ENA]
¡û
>W1711318450
MAYH01000012
Bacteroidota
Chryseobacterium artocarpi [MAYH]
38583
38498
-
Ser
GCT
[ENA]
¡û
>W1711767802
MVAG01000151
Bacteroidota
Chryseobacterium mucoviscidosis VT16-26 [MVAG]
13787
13872
+
Ser
GCT
[ENA]
¡û
>C171083790
CP018786
Bacteroidota
Chryseobacterium indologenes AA5 [CP018786]
1097141
1097056
-
Ser
GCT
-
¡û
>W131236983
AUMT01000003
Bacteroidota
Chryseobacterium daeguense DSM 19388 [AUMT]
267641
267726
+
Ser
GCT
[ENA]
¡û
>W141007785
AGYA01000017
Bacteroidota
Bergeyella zoohelcum ATCC 43767 [AGYA]
55303
55218
-
Ser
GCT
[ENA]
¡û
>W141007839
AGYB01000028
Bacteroidota
Bergeyella zoohelcum CCUG 30536 [AGYB]
59752
59837
+
Ser
GCT
[ENA]
¡û
>WENV181025855
ODXB01057947
[ODXB] human metagenome; G_DNA_Buccal mucosa
198
283
+
Ser
GCT
[ENA]
¢þ
>WENV181046727
ODXX01001681
[ODXX] human metagenome; G_DNA_Buccal mucosa
1060
975
-
Ser
GCT
[ENA]
¢þ
>WENV181205806
OFAP01007032
[OFAP] metagenome; hydrothermal vent
57
142
+
Ser
GCT
[ENA]
¢þ
>WENV181206903
OFAX01001129
[OFAX] metagenome; hydrothermal vent
57
142
+
Ser
GCT
[ENA]
¢þ
>W141223114
BACY01000609
Bacteroidota
Flavobacterium sp. B17 [BACY]
22261
22176
-
Ser
GCT
[ENA]
¡û
>W141289822
JARQ01000006
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
244045
244130
+
Ser
GCT
[ENA]
¡û
>C181225808
LT906465
Bacteroidota
Chryseobacterium taklimakanense NCTC13490 [LT906465]
2592624
2592539
-
Ser
GCT
-
¡û
>C191112489
CP033811
Bacteroidota
Chryseobacterium arthrosphaerae FDAARGOS_519 [CP033811]
698263
698178
-
Ser
GCT
-
¡û
>C191115246
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
1243516
1243431
-
Ser
GCT
-
¡û
>C191116314
CP033931
Bacteroidota
Chryseobacterium bernardetii H4638 [CP033931]
4358778
4358693
-
Ser
GCT
-
¡û
>C191116409
CP033932
Bacteroidota
Chryseobacterium bernardetii G0229 [CP033932]
2521779
2521694
-
Ser
GCT
-
¡û
>C191120898
CP034171
Bacteroidota
Chryseobacterium taklimakanense H4753 [CP034171]
1795409
1795494
+
Ser
GCT
-
¡û
>C191120953
CP034173
Bacteroidota
Chryseobacterium taklimakanense F9257 [CP034173]
1003272
1003187
-
Ser
GCT
-
¡û
>C191204283
LR134289
Bacteroidota
Chryseobacterium gleum NCTC11432 [LR134289]
4943501
4943416
-
Ser
GCT
-
¡û
>C191219116
LR215974
Bacteroidota
Chryseobacterium taihuense 3012STDY6944375 [LR215974]
1439440
1439525
+
Ser
GCT
-
¡û
>W09126952
ACKQ01000001
Bacteroidota
Chryseobacterium gleum ATCC 35910 [ACKQ]
206665
206580
-
Ser
GCT
[ENA]
¡û
>W141802096
JPEQ01000012
Bacteroidota
Chryseobacterium sp. P1-3 [JPEQ]
9900
9815
-
Ser
GCT
[ENA]
¡û
>W141809615
JPRP01000005
Bacteroidota
Chryseobacterium formosense [JPRP]
80798
80713
-
Ser
GCT
[ENA]
¡û
>W141815938
JQJM01000037
Bacteroidota
Chryseobacterium sp. CF365 [JQJM]
14540
14455
-
Ser
GCT
[ENA]
¡û
>W141817701
JQKZ01000001
Bacteroidota
Chryseobacterium sp. CF284 [JQKZ]
286088
286173
+
Ser
GCT
[ENA]
¡û
>W141819064
JQMA01000001
Bacteroidota
Chryseobacterium sp. CF299 [JQMA]
68258
68173
-
Ser
GCT
[ENA]
¡û
>W1910184843
BJTC01000008
Bacteroidota
Chryseobacterium sp. ON_d1 [BJTC]
228879
228964
+
Ser
GCT
[ENA]
¡û
>W1911218507
NRQT01000015
Bacteroidota
Chryseobacterium sp. CH25 [NRQT]
48540
48625
+
Ser
GCT
[ENA]
¡û
>W1911586388
PIZV01000036
Bacteroidota
Chryseobacterium sp. PMSZPI [PIZV]
18229
18314
+
Ser
GCT
[ENA]
¡û
>W1911680489
QICX01000010
Bacteroidota
Chryseobacterium sp. CBTAP 102 [QICX]
147897
147982
+
Ser
GCT
[ENA]
¡û
>W1911701182
QNUE01000004
Bacteroidota
Chryseobacterium flavum KCTC 12877 [QNUE]
89153
89068
-
Ser
GCT
[ENA]
¡û
>W1911701880
QNVU01000024
Bacteroidota
Candidatus Chryseobacterium massiliae massiliae CCUG 51329 [QNVU]
42600
42515
-
Ser
GCT
[ENA]
¡û
>W1911701951
QNVV01000009
Bacteroidota
Chryseobacterium pennipullorum 7_F195 [QNVV]
148589
148674
+
Ser
GCT
[ENA]
¡û
>W1911749831
QWIV01000014
Bacteroidota
Chryseobacterium nematophagum JUb275 [QWIV]
984636
984721
+
Ser
GCT
[ENA]
¡û
>W1810090029
PGFD01000003
Bacteroidota
Chryseobacterium geocarposphaerae DSM 27617 [PGFD]
180684
180769
+
Ser
GCT
[ENA]
¡û
>W1810475309
QAIX01000988
Bacteroidota
Chryseobacterium sp. HMWF001 [QAIX]
3797
3882
+
Ser
GCT
[ENA]
¡û
>W1810538618
QDFZ01000013
Bacteroidota
Chryseobacterium sp. KLBC 52 [QDFZ]
8920
8835
-
Ser
GCT
[ENA]
¡û
>W1810570107
QEHP01000039
Bacteroidota
Chryseobacterium sp. HMWF035 [QEHP]
12902
12987
+
Ser
GCT
[ENA]
¡û
>W1810609238
QGTV01000017
Bacteroidota
Chryseobacterium sp. AG844 [QGTV]
94760
94845
+
Ser
GCT
[ENA]
¡û
>C151002625
AP014624
Bacteroidota
Chryseobacterium sp. StRB126 [AP014624]
1520277
1520192
-
Ser
GCT
[Ensembl]
¡û
>C151062225
CP009928
Bacteroidota
Chryseobacterium gallinarum DSM 27622 [CP009928]
2895647
2895562
-
Ser
GCT
[Ensembl]
¡û
>W1511432172
JUGI01000004
Bacteroidota
Chryseobacterium sp. YR459 [JUGI]
61820
61735
-
Ser
GCT
[ENA]
¡û
>W1511432430
JUGN01000004
Bacteroidota
Chryseobacterium sp. YR480 [JUGN]
57366
57281
-
Ser
GCT
[ENA]
¡û
>W1511432555
JUGP01000002
Bacteroidota
Chryseobacterium sp. YR477 [JUGP]
877513
877598
+
Ser
GCT
[ENA]
¡û
>W1511489541
JWTA01000002
Bacteroidota
Chryseobacterium taiwanense TPW19 [JWTA]
133481
133396
-
Ser
GCT
[ENA]
¡û
>W1511587152
LAZY01000040
Bacteroidota
Chryseobacterium indologenes J31 [LAZY]
31296
31381
+
Ser
GCT
[ENA]
¡û
>W1610436724
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
38011
37926
-
Ser
GCT
[ENA]
¡û
>W1610655842
LJOD01000018
Bacteroidota
Chryseobacterium indologenes [LJOD]
81574
81489
-
Ser
GCT
[ENA]
¡û
>W1610912634
LSIL01000159
Bacteroidota
Chryseobacterium sp. CCH4-E10 [LSIL]
19029
19114
+
Ser
GCT
[ENA]
¡û
>W1610943315
LUVZ01000047
Bacteroidota
Chryseobacterium cucumeris GSE06 [LUVZ]
159013
159098
+
Ser
GCT
[ENA]
¡û
>W1611059120
MAUH01000007
Bacteroidota
Chryseobacterium sp. CBo1 [MAUH]
86416
86501
+
Ser
GCT
[ENA]
¡û
>W1611061686
MAYF01000323
Bacteroidota
Chryseobacterium contaminans [MAYF]
85211
85296
+
Ser
GCT
[ENA]
¡û
>W1611061732
MAYG01000001
Bacteroidota
Chryseobacterium arthrosphaerae [MAYG]
51600
51515
-
Ser
GCT
[ENA]
¡û
>W1611061793
MAYH01000012
Bacteroidota
Chryseobacterium artocarpi [MAYH]
38583
38498
-
Ser
GCT
[ENA]
¡û
>W1710436460
FJVD01000008
Bacteroidota
Chryseobacterium timonianum G972 [FJVD]
38011
37926
-
Ser
GCT
[ENA]
¡û
>W1710518230
FNDW01000017
Bacteroidota
Chryseobacterium taeanense [FNDW]
38034
38119
+
Ser
GCT
[ENA]
¡û
>W1710522406
FNHD01000024
Bacteroidota
Chryseobacterium taihuense [FNHD]
19558
19643
+
Ser
GCT
[ENA]
¡û
>W1710540312
FNWQ01000004
Bacteroidota
Chryseobacterium culicis [FNWQ]
300042
300127
+
Ser
GCT
[ENA]
¡û
>W1710545846
FOBV01000003
Bacteroidota
Chryseobacterium taichungense [FOBV]
466597
466682
+
Ser
GCT
[ENA]
¡û
>W1710554865
FOIU01000003
Bacteroidota
Chryseobacterium wanjuense [FOIU]
209960
210045
+
Ser
GCT
[ENA]
¡û
>W1710577132
FPAP01000003
Bacteroidota
Chryseobacterium formosense [FPAP]
796334
796419
+
Ser
GCT
[ENA]
¡û
>W1710583421
FQUT01000015
Bacteroidota
Chryseobacterium arachidis [FQUT]
583
498
-
Ser
GCT
[ENA]
¡û
>W1710584474
FQVO01000007
Bacteroidota
Chryseobacterium takakiae [FQVO]
68446
68361
-
Ser
GCT
[ENA]
¡û
>W1710591085
FRBM01000004
Bacteroidota
Chryseobacterium contaminans [FRBM]
447165
447250
+
Ser
GCT
[ENA]
¡û
>W1710596705
FTMT01000016
Bacteroidota
Chryseobacterium sp. RU33C [FTMT]
11571
11486
-
Ser
GCT
[ENA]
¡û
>W1710599104
FTOL01000012
Bacteroidota
Chryseobacterium ureilyticum [FTOL]
70539
70624
+
Ser
GCT
[ENA]
¡û
>W1710599593
FTOV01000004
Bacteroidota
Chryseobacterium gambrini [FTOV]
94300
94215
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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