This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49321 (40 seq.)
>W1710803006
LJYG01000006
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
41328
41240
-
Leu
TAA
[ENA]
¡û
>W1711180104
LWIG01000004
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
47691
47603
-
Leu
TAA
[ENA]
¡û
>W1711180134
LWIG01000060
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
105304
105216
-
Leu
TAA
[ENA]
¡û
>W1711180136
LWIG01000066
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
757
845
+
Leu
TAA
[ENA]
¡û
>W131167476
ARDH01000017
Alphaproteobacteria
Bradyrhizobium sp. WSM4349 WSM4349 [ARDH]
33352
33264
-
Leu
TAA
[ENA]
¡û
>W1711928302
NAEX01000179
Alphaproteobacteria
Bradyrhizobium canariense [NAEX]
97310
97222
-
Leu
TAA
[ENA]
¡û
>W1711928336
NAEY01000154
Alphaproteobacteria
Bradyrhizobium canariense [NAEY]
25056
25144
+
Leu
TAA
[ENA]
¡û
>W1711928379
NAEZ01000161
Alphaproteobacteria
Bradyrhizobium canariense [NAEZ]
97273
97185
-
Leu
TAA
[ENA]
¡û
>W1711928441
NAFA01000197
Alphaproteobacteria
Bradyrhizobium canariense [NAFA]
97331
97243
-
Leu
TAA
[ENA]
¡û
>W1711928480
NAFB01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFB]
29104
29192
+
Leu
TAA
[ENA]
¡û
>W1711928548
NAFC01000177
Alphaproteobacteria
Bradyrhizobium canariense [NAFC]
241513
241425
-
Leu
TAA
[ENA]
¡û
>W1711928594
NAFD01000192
Alphaproteobacteria
Bradyrhizobium canariense [NAFD]
97324
97236
-
Leu
TAA
[ENA]
¡û
>W1711928632
NAFE01000222
Alphaproteobacteria
Bradyrhizobium canariense [NAFE]
256907
256995
+
Leu
TAA
[ENA]
¡û
>W1711928659
NAFF01000091
Alphaproteobacteria
Bradyrhizobium canariense [NAFF]
25012
25100
+
Leu
TAA
[ENA]
¡û
>W1711928730
NAFG01000178
Alphaproteobacteria
Bradyrhizobium canariense [NAFG]
97488
97400
-
Leu
TAA
[ENA]
¡û
>W1711928781
NAFH01000176
Alphaproteobacteria
Bradyrhizobium canariense [NAFH]
97402
97314
-
Leu
TAA
[ENA]
¡û
>W1711928830
NAFI01000187
Alphaproteobacteria
Bradyrhizobium canariense [NAFI]
256822
256910
+
Leu
TAA
[ENA]
¡û
>W1711928860
NAFJ01000141
Alphaproteobacteria
Bradyrhizobium canariense [NAFJ]
24939
25027
+
Leu
TAA
[ENA]
¡û
>W1711928954
NAFL01000255
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
39406
39318
-
Leu
TAA
[ENA]
¡û
>C171064697
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4515726
4515638
-
Leu
TAA
-
¡û
>W141150261
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
43053
42965
-
Leu
TAA
[ENA]
¡û
>W141151154
AXAV01000019
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
136416
136504
+
Leu
TAA
[ENA]
¡û
>W141169200
AXVP01000041
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
37460
37372
-
Leu
TAA
[ENA]
¡û
>W141275964
JADK01000009
Alphaproteobacteria
Bradyrhizobium sp. URHA0013 [JADK]
229075
228987
-
Leu
TAA
[ENA]
¡û
>WENV170706639
LNAP01005019
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1476
1564
+
Leu
TAA
[ENA]
¢þ
>C181178238
CP029427
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 85S1MB [CP029427]
4066309
4066397
+
Leu
TAA
-
¡û
>C191186633
CP041090
Alphaproteobacteria
Bradyrhizobium symbiodeficiens 65S1MB [CP041090]
3375193
3375281
+
Leu
TAA
-
¡û
>W1910183062
BJNK01000002
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
39672
39584
-
Leu
TAA
[ENA]
¡û
>W1810400165
PYFW01000007
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
266838
266750
-
Leu
TAA
[ENA]
¡û
>W1810400213
PYFX01000007
Alphaproteobacteria
Bradyrhizobium sp. MOS002 [PYFX]
233005
232917
-
Leu
TAA
[ENA]
¡û
>W1511353638
JRPN01000024
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
248927
249015
+
Leu
TAA
[ENA]
¡û
>C121000492
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4278481
4278393
-
Leu
TAA
[Ensembl]
¡û
>C161017416
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1326602
1326514
-
Leu
TAA
[Ensembl]
¡û
>C161107857
LN901633
Alphaproteobacteria
Bradyrhizobium sp. [LN901633]
6227802
6227714
-
Leu
TAA
-
¡û
>C161107952
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4021932
4021844
-
Leu
TAA
-
¡û
>W121036203
AHLW01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
5285805
5285893
+
Leu
TAA
[ENA]
¡û
>W121065293
AJPX01000323
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
3428
3340
-
Leu
TAA
[ENA]
¡û
>W121065359
AJPY01000566
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
3459
3371
-
Leu
TAA
[ENA]
¡û
>W121065415
AJPZ01000470
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
789
877
+
Leu
TAA
[ENA]
¡û
>W1610666863
LJYG01000006
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
41328
41240
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK