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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.493260 (42 seq.)
>W1710878212
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
362497
362424
-
Cys
GCA
[ENA]
¡û
>W1710887801
LMZF01000014
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
97279
97206
-
Cys
GCA
[ENA]
¡û
>W1711213656
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
788811
788738
-
Cys
GCA
[ENA]
¡û
>W1711213753
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
607525
607452
-
Cys
GCA
[ENA]
¡û
>W1711213782
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
640671
640744
+
Cys
GCA
[ENA]
¡û
>W131227329
AUFB01000016
Alphaproteobacteria
Rhizobium leucaenae USDA 9039 [AUFB]
56921
56848
-
Cys
GCA
[ENA]
¡û
>W1711489115
MKIN01000022
Alphaproteobacteria
Allorhizobium taibaishanense [MKIN]
287677
287604
-
Cys
GCA
[ENA]
¡û
>W1711636784
MPVZ01000006
Alphaproteobacteria
Rhizobium sp. P44RR-XXIV [MPVZ]
97490
97417
-
Cys
GCA
[ENA]
¡û
>W141236106
BAYX01000028
Alphaproteobacteria
Rhizobium rhizogenes NBRC 13257 [BAYX]
6783
6856
+
Cys
GCA
[ENA]
¡û
>WENV182951607
OKVU01005398
[OKVU] human gut metagenome; human gut
78
5
-
Cys
GCA
[ENA]
¢þ
>WENV183807315
PVBE011190124
[PVBE] marine metagenome; water
151
224
+
Cys
GCA
[ENA]
¢þ
>WENV170683506
LFIK01013929
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
5426
5499
+
Cys
GCA
[ENA]
¢þ
>W141485663
JFZP01000013
Alphaproteobacteria
Rhizobium rhizogenes [JFZP]
1460880
1460953
+
Cys
GCA
[ENA]
¡û
>C181099253
CP024311
Alphaproteobacteria
Rhizobium sp. NXC24 [CP024311]
1757858
1757931
+
Cys
GCA
-
¡û
>C181129988
CP026265
Alphaproteobacteria
Aminobacter sp. MSH1 [CP026265]
3822589
3822516
-
Cys
GCA
-
¡û
>C181171004
CP028968
Alphaproteobacteria
Aminobacter sp. MSH1 [CP028968]
3822255
3822182
-
Cys
GCA
-
¡û
>C191093754
CP032694
Alphaproteobacteria
Rhizobium jaguaris CCGE525 [CP032694]
1883103
1883176
+
Cys
GCA
-
¡û
>C191152262
CP036532
Alphaproteobacteria
Roseitalea porphyridii MA7-20 [CP036532]
1638211
1638284
+
Cys
GCA
-
¡û
>W141816446
JQJW01000001
Alphaproteobacteria
Rhizobium rhizogenes [JQJW]
1826578
1826651
+
Cys
GCA
[ENA]
¡û
>W141816516
JQJX01000007
Alphaproteobacteria
Rhizobium rhizogenes [JQJX]
85810
85737
-
Cys
GCA
[ENA]
¡û
>W141817751
JQLA01000001
Alphaproteobacteria
Rhizobium sp. OK494 [JQLA]
5837
5764
-
Cys
GCA
[ENA]
¡û
>W141821095
JQNH01000001
Alphaproteobacteria
Rhizobiales bacterium YIM 77505 [JQNH]
1760246
1760173
-
Cys
GCA
[ENA]
¡û
>C09100708
CP000628
Alphaproteobacteria
Rhizobium rhizogenes K84 [CP000628, CP000629]
1658260
1658187
-
Cys
GCA
[Ensembl]
¡û
>W1911788055
QYBC01000030
Alphaproteobacteria
Lichenibacterium ramalinae RmlP001 [QYBC]
33970
34043
+
Cys
GCA
[ENA]
¡û
>W1810403654
PYJN01000013
Alphaproteobacteria
Rhizobium sp. SEMIA4064 [PYJN]
413755
413828
+
Cys
GCA
[ENA]
¡û
>W1810592081
QFWV01000002
Alphaproteobacteria
Oceaniradius stylonematis StC1 [QFWV]
365715
365788
+
Cys
GCA
[ENA]
¡û
>W1810608963
QGTR01000001
Alphaproteobacteria
Hoeflea marina DSM 16791 [QGTR]
1008656
1008729
+
Cys
GCA
[ENA]
¡û
>SRA1014646
SRR023845.239501
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
86
13
-
Cys
GCA
[SRA]
>W1511433500
JUHG01000011
Alphaproteobacteria
Rhizobium rhizogenes OV677 [JUHG]
81787
81714
-
Cys
GCA
[ENA]
¡û
>W1511433953
JUHP01000001
Alphaproteobacteria
Rhizobium rhizogenes YR530 [JUHP]
153967
153894
-
Cys
GCA
[ENA]
¡û
>W121068990
AJVM01000008
Alphaproteobacteria
Rhizobium sp. AP16 [AJVM]
87036
86963
-
Cys
GCA
[ENA]
¡û
>W1610514476
FMAF01000005
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
78808
78735
-
Cys
GCA
[ENA]
¡û
>W1610514558
FMAH01000004
Alphaproteobacteria
Rhizobium miluonense [FMAH]
162776
162849
+
Cys
GCA
[ENA]
¡û
>W1610740558
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
362497
362424
-
Cys
GCA
[ENA]
¡û
>W1610748501
LMZF01000014
Alphaproteobacteria
Rhizobium leucaenae [LMZF]
97279
97206
-
Cys
GCA
[ENA]
¡û
>W1611000660
LXKN01000001
Alphaproteobacteria
Rhizobium sp. AC27/96 [LXKN]
788811
788738
-
Cys
GCA
[ENA]
¡û
>W1611000757
LXKP01000001
Alphaproteobacteria
Agrobacterium sp. B131/95 [LXKP]
607525
607452
-
Cys
GCA
[ENA]
¡û
>W1611000786
LXKQ01000001
Alphaproteobacteria
Agrobacterium sp. B133/95 [LXKQ]
640671
640744
+
Cys
GCA
[ENA]
¡û
>W1710500166
FMAF01000005
Alphaproteobacteria
Rhizobium lusitanum [FMAF]
78808
78735
-
Cys
GCA
[ENA]
¡û
>W1710500248
FMAH01000004
Alphaproteobacteria
Rhizobium miluonense [FMAH]
162776
162849
+
Cys
GCA
[ENA]
¡û
>W1710525493
FNJP01000001
Alphaproteobacteria
Phyllobacterium sp. YR620 [FNJP]
1127918
1127991
+
Cys
GCA
[ENA]
¡û
>W1710565432
FORF01000005
Alphaproteobacteria
Aquamicrobium aerolatum DSM 21857 [FORF]
6926
6853
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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