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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49404 (69 seq.)
>W1711294767
MABH01000137
Alphaproteobacteria
Cereibacter johrii [MABH]
22706
22795
+
Ser
GGA
[ENA]
¡û
>W1711385819
MEES01000002
Alphaproteobacteria
Paracoccus sp. SCN 68-21 [MEES]
708
619
-
Ser
GGA
[ENA]
¡û
>W131058661
ANFS01000044
Alphaproteobacteria
Rhodobacter sp. AKP1 [ANFS]
88210
88121
-
Ser
GGA
[ENA]
¡û
>W131155852
AQOX01000003
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
364150
364239
+
Ser
GGA
[ENA]
¡û
>W131216070
ATVN01000009
Alphaproteobacteria
Pseudorhodobacter ferrugineus DSM 5888 [ATVN]
149301
149390
+
Ser
GGA
[ENA]
¡û
>C171037005
CP015210
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-13 [CP015210, CP015211]
1942458
1942369
-
Ser
GGA
-
¡û
>C019230
CP000143
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP000143, CP000144]
1942528
1942439
-
Ser
GGA
[Ensembl]
¡û
>C019277
CP000661
Alphaproteobacteria
Cereibacter sphaeroides [CP000661]
1850753
1850842
+
Ser
GGA
[Ensembl]
¡û
>C019320
CP000577
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [CP000577, CP000578]
1974842
1974753
-
Ser
GGA
[Ensembl]
¡û
>WENV180231738
OBCO01000001
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
263595
263506
-
Ser
GGA
[ENA]
¢þ
>WENV180232712
OBCP01000001
[OBCP] synthetic metagenome; purchased from BEI Resources HM-276D
505711
505622
-
Ser
GGA
[ENA]
¢þ
>w001254
AAAE01000130
Alphaproteobacteria
Cereibacter sphaeroides [AAAE]
5627
5536
-
Ser
GGA
[ENA]
¡û
>WENV180569513
OCLR01000122
[OCLR] synthetic metagenome; purchased from BEI Resources HM-276D
98341
98252
-
Ser
GGA
[ENA]
¢þ
>WENV180570444
OCLS01000119
[OCLS] synthetic metagenome; purchased from BEI Resources HM-276D
123087
122998
-
Ser
GGA
[ENA]
¢þ
>WENV180571095
OCLT01000002
[OCLT] synthetic metagenome; purchased from BEI Resources HM-276D
263484
263395
-
Ser
GGA
[ENA]
¢þ
>WENV180573357
OCLW01000006
[OCLW] synthetic metagenome; purchased from BEI Resources HM-276D
233735
233824
+
Ser
GGA
[ENA]
¢þ
>WENV180639421
OCRL01000002
[OCRL] synthetic metagenome; purchased from BEI Resources HM-276D
263484
263395
-
Ser
GGA
[ENA]
¢þ
>WENV180640324
OCRM01000001
[OCRM] synthetic metagenome; purchased from BEI Resources HM-276D
505711
505622
-
Ser
GGA
[ENA]
¢þ
>W141063313
APGJ01000004
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [APGJ]
365031
365120
+
Ser
GGA
[ENA]
¡û
>W141230432
BATB01000015
Alphaproteobacteria
Limimaricola cinnabarinus LL-001 [BATB]
18255
18344
+
Ser
GGA
[ENA]
¡û
>WENV170014614
AYSL01000884
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
273
362
+
Ser
GGA
[ENA]
¢þ
>PL191001397
CP039965
Alphaproteobacteria
Pseudorhodobacter sp. S12M18 plasmid:unnamed1 (CP039965)
1249356
1249445
+
Ser
GGA
[ENA]
¡û
>C181017236
CP015287
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-20 [CP015287, CP015288]
1942445
1942356
-
Ser
GGA
-
¡û
>C181191121
CP030271
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [CP030271, CP030272]
1942465
1942376
-
Ser
GGA
-
¡û
>C181194171
CP030918
Alphaproteobacteria
Paracoccus suum SC2-6 [CP030918]
2281676
2281765
+
Ser
GGA
-
¡û
>C191079654
CP031750
Alphaproteobacteria
Cereibacter sphaeroides EBL0706 [CP031750, CP031751]
1607747
1607836
+
Ser
GGA
-
¡û
>W09104750
AAME01000075
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17025 [AAME]
1407
1318
-
Ser
GGA
[ENA]
¡û
>W09104770
AAMF01000002
Alphaproteobacteria
Cereibacter sphaeroides ATCC 17029 [AAMF]
706961
707050
+
Ser
GGA
[ENA]
¡û
>C191151000
CP036419
Alphaproteobacteria
Cereibacter sphaeroides HJ [CP036419, CP036420]
1026717
1026806
+
Ser
GGA
-
¡û
>C191159590
CP038439
Alphaproteobacteria
Paracoccus liaowanqingii 2251 [CP038439]
2316443
2316354
-
Ser
GGA
-
¡û
>W1910548876
FZOV01000005
Alphaproteobacteria
Cereibacter sphaeroides DSM 18937 [FZOV]
233813
233902
+
Ser
GGA
[ENA]
¡û
>W1910549888
FZQB01000015
Alphaproteobacteria
Paracoccus seriniphilus DSM 14827 [FZQB]
315
226
-
Ser
GGA
[ENA]
¡û
>C09109068
CP001150
Alphaproteobacteria
Cereibacter sphaeroides KD131 KD131; KCTC 12085 [CP001150, CP001151]
1574401
1574312
-
Ser
GGA
[Ensembl]
¡û
>W1911189707
NQWH01000010
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
122832
122743
-
Ser
GGA
[ENA]
¡û
>W1911491944
OAOQ01000026
Alphaproteobacteria
Cereibacter ovatus JA234 [OAOQ]
731
820
+
Ser
GGA
[ENA]
¡û
>W1911698522
QNRC01000057
Alphaproteobacteria
Paracoccus siganidrum M26 [QNRC]
472
383
-
Ser
GGA
[ENA]
¡û
>W1911705518
QOKZ01000005
Alphaproteobacteria
Paracoccus alkanivorans 4·î2Æü [QOKZ]
312886
312797
-
Ser
GGA
[ENA]
¡û
>W1911718105
QQVY01000005
Alphaproteobacteria
Paracoccus sp. JM45 [QQVY]
182024
182113
+
Ser
GGA
[ENA]
¡û
>W1911749446
QWGP01000007
Alphaproteobacteria
Cereibacter sphaeroides FY [QWGP]
2570
2481
-
Ser
GGA
[ENA]
¡û
>W1911766283
QXDK01000014
Alphaproteobacteria
Cereibacter sphaeroides SCJ [QXDK]
88732
88643
-
Ser
GGA
[ENA]
¡û
>W1911810983
QZCG01000016
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
49850
49761
-
Ser
GGA
[ENA]
¡û
>W1911813198
QZEV01000039
Alphaproteobacteria
Paracoccus aestuarii DSM 19484 [QZEV]
13365
13454
+
Ser
GGA
[ENA]
¡û
>W1911813229
QZEW01000002
Alphaproteobacteria
Paracoccus siganidrum DSM 26381 [QZEW]
62182
62093
-
Ser
GGA
[ENA]
¡û
>W1810116257
PHOB01000015
Alphaproteobacteria
Cereibacter sphaeroides YL101 [PHOB]
14665
14576
-
Ser
GGA
[ENA]
¡û
>W1810119966
PHSI01000099
Alphaproteobacteria
Cereibacter azotoformans YLK20 [PHSI]
1581
1492
-
Ser
GGA
[ENA]
¡û
>W1810385269
PXNQ01000008
Alphaproteobacteria
Paracoccus methylarcula VKM B-2159 [PXNQ]
141210
141299
+
Ser
GGA
[ENA]
¡û
>W1810426271
PYWA01000007
Alphaproteobacteria
Paracoccus indicus IO390502 [PYWA]
117944
117855
-
Ser
GGA
[ENA]
¡û
>W1810445048
PZKG01000115
Alphaproteobacteria
Cereibacter changlensis JA139 [PZKG]
7874
7963
+
Ser
GGA
[ENA]
¡û
>W1810463821
PZZW01000002
Alphaproteobacteria
Cereibacter johrii JA192 [PZZW]
584274
584185
-
Ser
GGA
[ENA]
¡û
>W1810543605
QDKM01000007
Alphaproteobacteria
Pararhodobacter oceanensis AM505 [QDKM]
3401
3312
-
Ser
GGA
[ENA]
¡û
>W1810667430
QJPK01000010
Alphaproteobacteria
Paracoccus sediminilitoris DSL-16 [QJPK]
133352
133441
+
Ser
GGA
[ENA]
¡û
>W1810684480
QKYL01000045
Alphaproteobacteria
Paracoccus saliphilus CCTCC AB 2016131 [QKYL]
46002
46091
+
Ser
GGA
[ENA]
¡û
>W1810686012
QKZS01000019
Alphaproteobacteria
Cereibacter changlensis DSM 18774 [QKZS]
5424
5335
-
Ser
GGA
[ENA]
¡û
>W1810699115
QMCC01000008
Alphaproteobacteria
Cereibacter johrii CDR-SL 7Cii [QMCC]
677278
677189
-
Ser
GGA
[ENA]
¡û
>W1810785195
QRBG01000025
Alphaproteobacteria
Cereibacter sphaeroides f. sp. denitrificans IL106 [QRBG]
511257
511168
-
Ser
GGA
[ENA]
¡û
>W1511698358
LGHS01000020
Alphaproteobacteria
Pseudorhodobacter aquimaris KCTC 23043 [LGHS]
58947
59036
+
Ser
GGA
[ENA]
¡û
>W1511698414
LGHT01000032
Alphaproteobacteria
Pseudorhodobacter wandonensis KCTC 23672 [LGHT]
12482
12393
-
Ser
GGA
[ENA]
¡û
>W1511698465
LGHU01000086
Alphaproteobacteria
Pseudorhodobacter antarcticus KCTC 23700 [LGHU]
25602
25691
+
Ser
GGA
[ENA]
¡û
>W1511698488
LGHV01000020
Alphaproteobacteria
Pseudorhodobacter ferrugineus LMG 22047 [LGHV]
149701
149790
+
Ser
GGA
[ENA]
¡û
>W11160188
AFER01000001
Alphaproteobacteria
Cereibacter sphaeroides WS8N [AFER]
1347068
1346979
-
Ser
GGA
[ENA]
¡û
>C161048365
CP012960
Alphaproteobacteria
Cereibacter sphaeroides MBTLJ-8 [CP012960, CP012961]
1942454
1942365
-
Ser
GGA
-
¡û
>W121076789
AKBU01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKBU]
2964397
2964308
-
Ser
GGA
[ENA]
¡û
>W121102136
AKVW01000001
Alphaproteobacteria
Cereibacter sphaeroides 2.4.1 [AKVW]
1942461
1942372
-
Ser
GGA
[ENA]
¡û
>W1710540935
FNXG01000001
Alphaproteobacteria
Paracoccus alkenifer [FNXG]
131688
131599
-
Ser
GGA
[ENA]
¡û
>W1710546972
FOCO01000040
Alphaproteobacteria
Pseudorhodobacter antarcticus [FOCO]
3077
2988
-
Ser
GGA
[ENA]
¡û
>W1710547694
FODE01000020
Alphaproteobacteria
Paracoccus alcaliphilus [FODE]
58437
58526
+
Ser
GGA
[ENA]
¡û
>W1710592381
FRCK01000005
Alphaproteobacteria
Paracoccus solventivorans [FRCK]
97199
97288
+
Ser
GGA
[ENA]
¡û
>W1710599541
FTOU01000008
Alphaproteobacteria
Paracoccus saliphilus [FTOU]
102032
101943
-
Ser
GGA
[ENA]
¡û
>W1710626830
JPKW01000005
Alphaproteobacteria
Paracoccus sp. SM22M-07 [JPKW]
81470
81381
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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