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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494338 (25 seq.)
>W1710915719
LNUL01000109
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis [LNUL]
746
673
-
Trp
CCA
[ENA]
¡û
>W1710915742
LNUL01000128
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis [LNUL]
1016
1089
+
Trp
CCA
[ENA]
¡û
>WENV180296223
OBJA01000101
[OBJA] soil metagenome; sediment, water from around vicinity
44659
44732
+
Trp
CCA
[ENA]
¢þ
>C181027281
CP017697
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC [CP017697]
2121200
2121127
-
Trp
CCA
-
¡û
>C181027731
CP017713
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM DSM 20001 [CP017713]
2060657
2060584
-
Trp
CCA
-
¡û
>W1910177153
BJDN01000033
Bacillota
Loigolactobacillus binensis 735-2 [BJDN]
707
780
+
Trp
CCA
[ENA]
¡û
>W1910841811
NAES01000002
Bacillota
Loigolactobacillus backii VTT E-123217 [NAES]
2137579
2137506
-
Trp
CCA
[ENA]
¡û
>W1910841861
NAET01000009
Bacillota
Loigolactobacillus backii L101 [NAET]
1050017
1050090
+
Trp
CCA
[ENA]
¡û
>W1810001128
BEXE01000055
Bacillota
Apilactobacillus micheneri NBRC 113063 [BEXE]
587
659
+
Trp
CCA
[ENA]
¡û
>W1810222686
POSN01000001
Bacillota
Apilactobacillus quenuiae HV_6 [POSN]
883
955
+
Trp
CCA
[ENA]
¡û
>W1810222759
POSO01000003
Bacillota
Apilactobacillus micheneri Hlig3 [POSO]
977
1049
+
Trp
CCA
[ENA]
¡û
>W1810222902
POST01000002
Bacillota
Apilactobacillus timberlakei HV_12 [POST]
363964
363892
-
Trp
CCA
[ENA]
¡û
>W11142078
AEOS01000070
Bacillota
Loigolactobacillus coryniformis subsp. torquens KCTC 3535 [AEOS]
21594
21521
-
Trp
CCA
[ENA]
¡û
>C161079045
CP014873
Bacillota
Loigolactobacillus backii TMW 1.1989 [CP014873]
2606322
2606249
-
Trp
CCA
[Ensembl]
¡û
>C161079117
CP014881
Bacillota
Loigolactobacillus backii TMW 1.1991 [CP014881]
1479547
1479474
-
Trp
CCA
-
¡û
>C161079134
CP014890
Bacillota
Loigolactobacillus backii TMW 1.1992 [CP014890]
419502
419575
+
Trp
CCA
-
¡û
>C161079199
CP014899
Bacillota
Loigolactobacillus backii TMW 1.2002 [CP014899]
1153575
1153648
+
Trp
CCA
-
¡û
>W121081239
AKFP01000039
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis CECT 5711 [AKFP]
612
685
+
Trp
CCA
[ENA]
¡û
>W1610030851
AYYI01000076
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
18432
18359
-
Trp
CCA
[ENA]
¡û
>W1610030961
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
95703
95631
-
Trp
CCA
[ENA]
¡û
>W1610033632
AZDC01000014
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 [AZDC]
21891
21964
+
Trp
CCA
[ENA]
¡û
>W1710027803
AYYI01000076
Bacillota
Loigolactobacillus rennini DSM 20253 [AYYI]
18432
18359
-
Trp
CCA
[ENA]
¡û
>W1710027913
AYYK01000025
Bacillota
Lapidilactobacillus dextrinicus DSM 20335 [AYYK]
95703
95631
-
Trp
CCA
[ENA]
¡û
>W1710030810
AZDC01000014
Bacillota
Loigolactobacillus coryniformis subsp. torquens DSM 20004 = KCTC 3535 [AZDC]
21891
21964
+
Trp
CCA
[ENA]
¡û
>W1710735984
LGIZ01000090
Bacillota
Loigolactobacillus backii [LGIZ]
905
978
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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