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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494612 (45 seq.)
>W131046000
AMSA01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os45 [AMSA]
300505
300578
+
Cys
GCA
[ENA]
¡û
>W131046042
AMSB01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
312558
312631
+
Cys
GCA
[ENA]
¡û
>W131062277
ANJR01000019
Betaproteobacteria
Herbaspirillum huttiense subsp. putei IAM 15032 [ANJR]
107788
107715
-
Cys
GCA
[ENA]
¡û
>W1711009618
LQQU01000059
Betaproteobacteria
Crenobacter luteus [LQQU]
69601
69528
-
Cys
GCA
[ENA]
¡û
>W1711082099
LSTO01000001
Betaproteobacteria
Noviherbaspirillum denitrificans [LSTO]
617741
617668
-
Cys
GCA
[ENA]
¡û
>W1711430716
MIJG01000006
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
780457
780530
+
Cys
GCA
[ENA]
¡û
>W1711583850
MNXT01000161
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_59_46 [MNXT]
4011
4083
+
Cys
GCA
[ENA]
¡û
>W1711583899
MNXU01000057
Betaproteobacteria
Betaproteobacteria bacterium CG2_30_68_42 [MNXU]
12809
12736
-
Cys
GCA
[ENA]
¡û
>W1711765121
MUXB01000114
Betaproteobacteria
Herbaspirillum sp. VT-16-41 [MUXB]
36261
36334
+
Cys
GCA
[ENA]
¡û
>W1712110252
NJGU01000001
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
650257
650184
-
Cys
GCA
[ENA]
¡û
>W141003854
AEEC02000091
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
160
87
-
Cys
GCA
[ENA]
¡û
>WENV181144995
OEHO01153899
[OEHO] metagenome; unknown
168
95
-
Cys
GCA
[ENA]
¢þ
>WENV181221631
OFCW01000134
[OFCW] microbial mat metagenome; Microbial Mat
28785
28858
+
Cys
GCA
[ENA]
¢þ
>WENV181839777
OGVO01012085
[OGVO] freshwater metagenome; freshwater
276
349
+
Cys
GCA
[ENA]
¢þ
>WENV181857696
OGWO01031997
[OGWO] freshwater metagenome; freshwater
150
77
-
Cys
GCA
[ENA]
¢þ
>W141241326
CAHF01000011
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
69598
69671
+
Cys
GCA
[ENA]
¡û
>W141258878
CBXX010000001
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
154700
154627
-
Cys
GCA
[ENA]
¡û
>WENV183686971
ORMF011076616
[ORMF] groundwater metagenome; groundwater
101761
101688
-
Cys
GCA
[ENA]
¢þ
>WENV183733695
PJTY01012043
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
60
133
+
Cys
GCA
[ENA]
¢þ
>WENV183735905
PJUB01010133
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
206
133
-
Cys
GCA
[ENA]
¢þ
>WENV183735965
PJUB01020537
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
202
129
-
Cys
GCA
[ENA]
¢þ
>WENV183739200
PJUE01003051
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
649
576
-
Cys
GCA
[ENA]
¢þ
>WENV170553528
CXWK01022224
[CXWK] wastewater metagenome; activated sludge
556
629
+
Cys
GCA
[ENA]
¢þ
>WENV170573169
FLYJ01002225
[FLYJ] hot springs metagenome; Sediment
862
789
-
Cys
GCA
[ENA]
¢þ
>WENV170659827
JXWR01157161
[JXWR] soil metagenome; rice field; ambient CO2
370
443
+
Cys
GCA
[ENA]
¢þ
>WENV170961556
MLJW01000149
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
44263
44190
-
Cys
GCA
[ENA]
¢þ
>C181071853
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
3692481
3692408
-
Cys
GCA
-
¡û
>C191029335
CP024996
Betaproteobacteria
Herbaspirillum rubrisubalbicans DSM 11543 [CP024996]
2134603
2134676
+
Cys
GCA
-
¡û
>C191124232
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
2068783
2068856
+
Cys
GCA
-
¡û
>C191156618
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
2218387
2218460
+
Cys
GCA
-
¡û
>W1910548777
FZOT01000006
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
56968
57041
+
Cys
GCA
[ENA]
¡û
>W1910577841
JUGD01000004
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
170575
170502
-
Cys
GCA
[ENA]
¡û
>W1910578276
JWJC01000001
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
297120
297193
+
Cys
GCA
[ENA]
¡û
>W1810194050
PKOI01000016
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
67431
67504
+
Cys
GCA
[ENA]
¡û
>C151087567
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
2200913
2200986
+
Cys
GCA
[Ensembl]
¡û
>W1510019335
BBWF01000053
Betaproteobacteria
Sulfuricella sp. T08 [BBWF]
114313
114386
+
Cys
GCA
[ENA]
¡û
>W1511480670
JWJG01000028
Betaproteobacteria
Noviherbaspirillum autotrophicum TSA66 [JWJG]
4115532
4115459
-
Cys
GCA
[ENA]
¡û
>W1511683863
LFLU01000003
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
69628
69701
+
Cys
GCA
[ENA]
¡û
>C161060440
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
2119542
2119615
+
Cys
GCA
[Ensembl]
¡û
>W121068690
AJVC01000003
Betaproteobacteria
Herbaspirillum sp. GW103 [AJVC]
694790
694863
+
Cys
GCA
[ENA]
¡û
>W121086391
AKJW01000083
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
209665
209592
-
Cys
GCA
[ENA]
¡û
>W121124635
BAFJ01000005
Betaproteobacteria
Sulfuricella denitrificans skB26 [BAFJ]
398733
398660
-
Cys
GCA
[ENA]
¡û
>W1610071823
BCUJ01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
77338
77411
+
Cys
GCA
[ENA]
¡û
>W1610858138
LQQU01000059
Betaproteobacteria
Crenobacter luteus [LQQU]
69601
69528
-
Cys
GCA
[ENA]
¡û
>W1710069025
BCUJ01000003
Betaproteobacteria
Herbaspirillum rubrisubalbicans NBRC 102523 [BCUJ]
77338
77411
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK