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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.494846 (32 seq.)
>W1711188815
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3546
3471
-
Ala
TGC
[ENA]
¡û
>W1711505335
MKVK01000023
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
2333
2408
+
Ala
TGC
[ENA]
¡û
>WENV180285487
OBID01457377
[OBID] metagenome; sludge
155
230
+
Ala
TGC
[ENA]
¢þ
>WENV180694130
OCZS011988150
[OCZS] soil metagenome; soil
180
105
-
Ala
TGC
[ENA]
¢þ
>WENV181155202
OEID01028376
[OEID] soil metagenome; soil
233
158
-
Ala
TGC
[ENA]
¢þ
>WENV181162721
OEIO01008862
[OEIO] marine metagenome; sea ice
735
660
-
Ala
TGC
[ENA]
¢þ
>WENV181163829
OEIQ01284598
[OEIQ] soil metagenome; soil
53
128
+
Ala
TGC
[ENA]
¢þ
>WENV181304794
OFIC01003271
[OFIC] marine metagenome; sea ice
241
166
-
Ala
TGC
[ENA]
¢þ
>WENV181311851
OFJB01016104
[OFJB] sludge metagenome; sludge
1623
1548
-
Ala
TGC
[ENA]
¢þ
>WENV183627336
OOGL01000586
[OOGL] marine metagenome; sea ice
987
1062
+
Ala
TGC
[ENA]
¢þ
>WENV183630836
OOGU01004119
[OOGU] marine metagenome; sea ice
1919
1844
-
Ala
TGC
[ENA]
¢þ
>WENV183729190
PJTQ01009677
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
359
434
+
Ala
TGC
[ENA]
¢þ
>WENV183740790
PJUF01010357
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
361
436
+
Ala
TGC
[ENA]
¢þ
>WENV170002440
AGTN01029961
[AGTN] bioreactor metagenome; poplar biomass
2864
2939
+
Ala
TGC
[ENA]
¢þ
>WENV170003343
AGTN01305540
[AGTN] bioreactor metagenome; poplar biomass
599
674
+
Ala
TGC
[ENA]
¢þ
>WENV170987418
MWVX01188424
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
182
107
-
Ala
TGC
[ENA]
¢þ
>WENV170994094
MWWD01011580
[MWWD] soil metagenome; MS2-2 sample; Antarctic (ecotone) soil
392
467
+
Ala
TGC
[ENA]
¢þ
>C181155059
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
258841
258916
+
Ala
TGC
-
¡û
>C181155088
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2814657
2814582
-
Ala
TGC
-
¡û
>C181155109
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
258841
258916
+
Ala
TGC
-
¡û
>C181155138
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2814657
2814582
-
Ala
TGC
-
¡û
>W141564466
JIAU01000005
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
172502
172577
+
Ala
TGC
[ENA]
¡û
>W1810538548
QDFY01000007
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
96936
97011
+
Ala
TGC
[ENA]
¡û
>W1810579410
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
1256937
1256862
-
Ala
TGC
[ENA]
¡û
>W1810586278
QFFF01000001
Alphaproteobacteria
Sphingosinicella humi QZX222 [QFFF]
975843
975768
-
Ala
TGC
[ENA]
¡û
>C151101053
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
3844979
3845054
+
Ala
TGC
[Ensembl]
¡û
>C151101071
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
2089010
2088935
-
Ala
TGC
[Ensembl]
¡û
>W1610535238
JRQQ01000016
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
5656
5581
-
Ala
TGC
[ENA]
¡û
>W1610990934
LWQU01000021
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
3546
3471
-
Ala
TGC
[ENA]
¡û
>ENV000461
AF422569
Environmental sample from ENV division of INSDC
328
403
+
Ala
TGC
[ENA]
>ENV004028
DQ190812
Environmental sample from ENV division of INSDC
1
76
+
Ala
TGC
[ENA]
>W1710637707
JRQQ01000016
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
5656
5581
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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