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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.496730 (51 seq.)
>W1710798600
LJTS01000034
Betaproteobacteria
Betaproteobacteria bacterium SG8_40 [LJTS]
8512
8439
-
Cys
GCA
[ENA]
¡û
>W131155729
AQOU01000044
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
190
263
+
Cys
GCA
[ENA]
¡û
>W1711307452
MAOS01000069
Betaproteobacteria
Pandoraea sp. ISTKB [MAOS]
195
268
+
Cys
GCA
[ENA]
¡û
>W1711505758
MKVU01000020
Betaproteobacteria
Pandoraea sp. 64-18 [MKVU]
318645
318572
-
Cys
GCA
[ENA]
¡û
>W1712077112
NGUQ01000014
Betaproteobacteria
Pandoraea sp. PE-S2T-3 [NGUQ]
385285
385212
-
Cys
GCA
[ENA]
¡û
>W1712077187
NGUR01000017
Betaproteobacteria
Pandoraea sp. PE-S2R-1 [NGUR]
110047
110120
+
Cys
GCA
[ENA]
¡û
>C171007392
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
941199
941126
-
Cys
GCA
-
¡û
>WENV001587
AACY020045165
Marine microbial communities from Global Ocean Sampling (GOS)
1609
1684
+
Cys
GCA
[ENA]
>WENV180041386
LLBZ010115686
[LLBZ] soil metagenome; soil from tomato rhizosphere
740
667
-
Cys
GCA
[ENA]
¢þ
>WENV180286026
OBID01937332
[OBID] metagenome; sludge
118
191
+
Cys
GCA
[ENA]
¢þ
>WENV180351972
OBLQ010137802
[OBLQ] soil metagenome; soil
371
298
-
Cys
GCA
[ENA]
¢þ
>W141091685
AUZF01000019
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
303809
303736
-
Cys
GCA
[ENA]
¡û
>WENV181163358
OEIQ01003595
[OEIQ] soil metagenome; soil
57
130
+
Cys
GCA
[ENA]
¢þ
>WENV181165439
OEIR01873519
[OEIR] soil metagenome; soil
139
66
-
Cys
GCA
[ENA]
¢þ
>WENV181286343
OFGV01020987
[OFGV] soil metagenome; Clay
352
279
-
Cys
GCA
[ENA]
¢þ
>WENV181288093
OFGY01008927
[OFGY] soil metagenome; Clay
648
575
-
Cys
GCA
[ENA]
¢þ
>WENV181293683
OFHG01015530
[OFHG] soil metagenome; Clay
672
599
-
Cys
GCA
[ENA]
¢þ
>WENV181297036
OFHK01005953
[OFHK] soil metagenome; Clay
1528
1601
+
Cys
GCA
[ENA]
¢þ
>WENV181401825
OFTX01008888
[OFTX] sludge metagenome; sludge
194
267
+
Cys
GCA
[ENA]
¢þ
>W141199910
AYXJ01000030
Betaproteobacteria
Pandoraea sp. E26 [AYXJ]
69049
69122
+
Cys
GCA
[ENA]
¡û
>WENV182553762
OJCR01028578
[OJCR] seawater metagenome; Sea water
987
914
-
Cys
GCA
[ENA]
¢þ
>WENV182586739
OJHK01004069
[OJHK] seawater metagenome; Sea water
4088
4015
-
Cys
GCA
[ENA]
¢þ
>WENV183692188
ORMF011876613
[ORMF] groundwater metagenome; groundwater
26737
26664
-
Cys
GCA
[ENA]
¢þ
>WENV170860861
MDTB01056623
[MDTB] marine metagenome; seawater
8900
8827
-
Cys
GCA
[ENA]
¢þ
>WENV170951704
MEHZ011565276
[MEHZ] marine metagenome; marine surface water
9157
9084
-
Cys
GCA
[ENA]
¢þ
>C181008379
CP010518
Betaproteobacteria
Pandoraea apista TF81F4 [CP010518]
2875726
2875653
-
Cys
GCA
-
¡û
>C181014196
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
5115541
5115468
-
Cys
GCA
-
¡û
>C191189029
CP041237
Betaproteobacteria
Pandoraea pnomenusa M202 [CP041237]
4406528
4406455
-
Cys
GCA
-
¡û
>W141816858
JQKE01000126
Betaproteobacteria
Stenoxybacter acetivorans DSM 19021 [JQKE]
116
189
+
Cys
GCA
[ENA]
¡û
>C141010429
CP006900
Betaproteobacteria
Pandoraea pnomenusa 3kgm [CP006900]
767484
767557
+
Cys
GCA
-
¡û
>C141010837
CP006938
Betaproteobacteria
Pandoraea pnomenusa RB-44 [CP006938]
1284418
1284345
-
Cys
GCA
[Ensembl]
¡û
>W1910699210
MERB01000002
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 [MERB]
69929
70002
+
Cys
GCA
[ENA]
¡û
>W1910699236
MERC01000052
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 [MERC]
219
146
-
Cys
GCA
[ENA]
¡û
>W1910699616
MERO01000239
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 [MERO]
15061
14988
-
Cys
GCA
[ENA]
¡û
>W1910856340
NBTA01000023
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
911369
911296
-
Cys
GCA
[ENA]
¡û
>W1810427554
PYYA01000008
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
85927
85854
-
Cys
GCA
[ENA]
¡û
>C151053931
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
2152130
2152057
-
Cys
GCA
-
¡û
>C151066460
CP010310
Betaproteobacteria
Pandoraea pulmonicola DSM 16583 [CP010310]
936723
936650
-
Cys
GCA
[Ensembl]
¡û
>SRA1024210
SRR035084.273222
454 Sequencing (SRP001805)
85
12
-
Cys
GCA
[SRA]
>C151074015
CP010897
Betaproteobacteria
Pandoraea vervacti NS15 [CP010897]
4643426
4643353
-
Cys
GCA
[Ensembl]
¡û
>C151079058
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
941198
941125
-
Cys
GCA
[Ensembl]
¡û
>C151086790
CP011807
Betaproteobacteria
Pandoraea faecigallinarum DSM 23572 [CP011807]
1590793
1590720
-
Cys
GCA
[Ensembl]
¡û
>W1510100635
CEWL01000010
Betaproteobacteria
Pandoraea apista LMG16407 [CEWL]
152238
152165
-
Cys
GCA
[ENA]
¡û
>W1511397427
JTCR01000009
Betaproteobacteria
Pandoraea fibrosis 6399 [JTCR]
12708
12781
+
Cys
GCA
[ENA]
¡û
>W1511397530
JTCS01000044
Betaproteobacteria
Pandoraea fibrosis 7641 [JTCS]
55370
55297
-
Cys
GCA
[ENA]
¡û
>C161017217
CP007506
Betaproteobacteria
Pandoraea pnomenusa RB38 [CP007506]
4425485
4425412
-
Cys
GCA
-
¡û
>C161056233
CP013480
Betaproteobacteria
Pandoraea norimbergensis DSM 11628 [CP013480]
822104
822031
-
Cys
GCA
-
¡û
>C161056263
CP013481
Betaproteobacteria
Pandoraea apista DSM 16535 [CP013481]
4639391
4639464
+
Cys
GCA
-
¡û
>C161086555
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
1555229
1555156
-
Cys
GCA
[Ensembl]
¡û
>W121102802
AKXS01000046
Betaproteobacteria
Pandoraea sp. B-6 [AKXS]
52872
52945
+
Cys
GCA
[ENA]
¡û
>W1610662557
LJTS01000034
Betaproteobacteria
Betaproteobacteria bacterium SG8_40 [LJTS]
8512
8439
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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