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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49694 (82 seq.)
>W1711068990
LSFF01000017
Bacillota
Latilactobacillus sakei [LSFF]
565
653
+
Leu
TAA
[ENA]
¡û
>W1711484792
MKDD01000022
Bacillota
Latilactobacillus sakei [MKDD]
19162
19074
-
Leu
TAA
[ENA]
¡û
>W1711484826
MKDE01000010
Bacillota
Latilactobacillus sakei [MKDE]
486
574
+
Leu
TAA
[ENA]
¡û
>W1711484935
MKDG01000024
Bacillota
Latilactobacillus curvatus [MKDG]
72699
72611
-
Leu
TAA
[ENA]
¡û
>W131196481
ASTI01000038
Bacillota
Latilactobacillus sakei subsp. sakei LS25 [ASTI]
253
165
-
Leu
TAA
[ENA]
¡û
>C171057524
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
159650
159738
+
Leu
TAA
-
¡û
>C171057549
CP017124
Bacillota
Latilactobacillus curvatus WiKim38 [CP017124]
1553856
1553768
-
Leu
TAA
-
¡û
>C012608
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
450922
451010
+
Leu
TAA
[Ensembl]
¡û
>C012645
CR936503
Bacillota
Latilactobacillus sakei subsp. sakei 23K [CR936503]
1758618
1758530
-
Leu
TAA
[Ensembl]
¡û
>WENV180671770
OCVV011320956
[OCVV] gut metagenome; gut
1685
1597
-
Leu
TAA
[ENA]
¢þ
>WENV180671776
OCVV011320956
[OCVV] gut metagenome; gut
1685
1597
-
Leu
TAA
[ENA]
¢þ
>WENV182539918
OIXV01029438
[OIXV] human gut metagenome; faeces
332
247
-
Leu
TAA
[ENA]
¢þ
>C181003605
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
684140
684225
+
Leu
TAA
-
¡û
>C181003638
AP017929
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 LT-13 [AP017929]
27832
27747
-
Leu
TAA
-
¡û
>C181003665
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
94275
94360
+
Leu
TAA
-
¡û
>C181003691
AP017931
Bacillota
Latilactobacillus sakei LK-145 [AP017931]
1455015
1454930
-
Leu
TAA
-
¡û
>C181044599
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
450610
450695
+
Leu
TAA
-
¡û
>C181044639
CP020459
Bacillota
Latilactobacillus sakei FAM18311 [CP020459]
1813654
1813569
-
Leu
TAA
-
¡û
>C181066059
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
222918
223003
+
Leu
TAA
-
¡û
>C181066084
CP022474
Bacillota
Latilactobacillus curvatus MRS6 [CP022474]
1626558
1626473
-
Leu
TAA
-
¡û
>C181066124
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
221020
221105
+
Leu
TAA
-
¡û
>C181066151
CP022475
Bacillota
Latilactobacillus curvatus KG6 [CP022475]
1622162
1622077
-
Leu
TAA
-
¡û
>C181071462
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
3689
3774
+
Leu
TAA
-
¡û
>C181071504
CP022709
Bacillota
Latilactobacillus sakei WiKim0063 [CP022709]
1366760
1366675
-
Leu
TAA
-
¡û
>C181113641
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
1325628
1325713
+
Leu
TAA
-
¡û
>C181113679
CP025136
Bacillota
Latilactobacillus sakei WiKim0072 [CP025136]
704763
704678
-
Leu
TAA
-
¡û
>C181123521
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
490968
491053
+
Leu
TAA
-
¡û
>C181123558
CP025839
Bacillota
Latilactobacillus sakei DS4 [CP025839]
1955074
1954989
-
Leu
TAA
-
¡û
>C181186056
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
156465
156550
+
Leu
TAA
-
¡û
>C181186081
CP029966
Bacillota
Latilactobacillus curvatus ZJUNIT8 [CP029966]
1506659
1506574
-
Leu
TAA
-
¡û
>C181194800
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
181601
181686
+
Leu
TAA
-
¡û
>C181194825
CP031003
Bacillota
Latilactobacillus curvatus TMW 1.1928 [CP031003]
1640925
1640840
-
Leu
TAA
-
¡û
>C181227409
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
471733
471818
+
Leu
TAA
-
¡û
>C181227442
LT960777
Bacillota
Latilactobacillus sakei FLEC01 [LT960777]
1777972
1777887
-
Leu
TAA
-
¡û
>C181227465
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
489600
489685
+
Leu
TAA
-
¡û
>C181227502
LT960781
Bacillota
Latilactobacillus sakei J64 [LT960781]
1916497
1916412
-
Leu
TAA
-
¡û
>C181227528
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
483079
483164
+
Leu
TAA
-
¡û
>C181227565
LT960784
Bacillota
Latilactobacillus sakei [LT960784]
1849284
1849199
-
Leu
TAA
-
¡û
>C181227589
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
493133
493218
+
Leu
TAA
-
¡û
>C181227626
LT960788
Bacillota
Latilactobacillus sakei MFPB16A1401 [LT960788]
1869257
1869172
-
Leu
TAA
-
¡û
>C181227650
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
472096
472181
+
Leu
TAA
-
¡û
>C181227687
LT960790
Bacillota
Latilactobacillus sakei J54 [LT960790]
1827386
1827301
-
Leu
TAA
-
¡û
>C191004172
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
215854
215939
+
Leu
TAA
-
¡û
>C191004197
AP018699
Bacillota
Latilactobacillus curvatus NFH-Km12 [AP018699]
1546586
1546501
-
Leu
TAA
-
¡û
>C191040466
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
3542
3627
+
Leu
TAA
-
¡û
>C191040507
CP026116
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [CP026116]
1376449
1376364
-
Leu
TAA
-
¡û
>C191092617
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
834174
834259
+
Leu
TAA
-
¡û
>C191092661
CP032633
Bacillota
Latilactobacillus sakei ZFM220 [CP032633]
210330
210245
-
Leu
TAA
-
¡û
>C191092680
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
519855
519940
+
Leu
TAA
-
¡û
>C191092717
CP032635
Bacillota
Latilactobacillus sakei ZFM225 [CP032635]
1860226
1860141
-
Leu
TAA
-
¡û
>C191092997
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1950707
1950792
+
Leu
TAA
-
¡û
>C191093011
CP032652
Bacillota
Latilactobacillus sakei LZ217 [CP032652]
1326867
1326782
-
Leu
TAA
-
¡û
>C191134848
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
220461
220546
+
Leu
TAA
-
¡û
>C191134873
CP035110
Bacillota
Latilactobacillus curvatus SRCM103465 [CP035110]
1619769
1619684
-
Leu
TAA
-
¡û
>W141559588
JHWV01000032
Bacillota
Anaerovibrio sp. RM50 [JHWV]
4180
4092
-
Leu
TAA
[ENA]
¡û
>W141560945
JHYA01000007
Bacillota
Anaerovibrio lipolyticus LB2005 [JHYA]
1128
1216
+
Leu
TAA
[ENA]
¡û
>W09127665
ACLD01000155
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [ACLD]
252
164
-
Leu
TAA
[ENA]
¡û
>W1910180972
BJLN01000044
Bacillota
Latilactobacillus sakei NBRC 3541 [BJLN]
253
168
-
Leu
TAA
[ENA]
¡û
>W1910751901
MKDL01000031
Bacillota
Latilactobacillus sakei RI-493 [MKDL]
486
571
+
Leu
TAA
[ENA]
¡û
>W1911493433
OBHK01000019
Bacillota
Latilactobacillus sakei J160x1 [OBHK]
160532
160447
-
Leu
TAA
[ENA]
¡û
>W1911533882
OKRC01000004
Bacillota
Latilactobacillus sakei CECT 9267 [OKRC]
177510
177425
-
Leu
TAA
[ENA]
¡û
>W1911551495
OVTU01000003
Bacillota
Latilactobacillus sakei CECT 9624 [OVTU]
188070
187985
-
Leu
TAA
[ENA]
¡û
>W1911631456
PUFE01000020
Bacillota
Latilactobacillus sakei subsp. sakei ATCC 15521 [PUFE]
404
489
+
Leu
TAA
[ENA]
¡û
>W1911706053
QOSE01000017
Bacillota
Latilactobacillus sakei TMW 1.411 [QOSE]
40888
40803
-
Leu
TAA
[ENA]
¡û
>W1510647571
CVPE01000001
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
4835
4747
-
Leu
TAA
[ENA]
¡û
>W1510647594
CVPE01000003
Bacillota
Rubeoparvulum massiliense mt6 [CVPE]
114491
114403
-
Leu
TAA
[ENA]
¡û
>W1511362386
JSCE01000084
Bacillota
Anaerovibrio lipolyticus 5S [JSCE]
17308
17220
-
Leu
TAA
[ENA]
¡û
>W1511402304
JTJV01000135
Bacillota
Latilactobacillus curvatus NRIC0822 [JTJV]
253
165
-
Leu
TAA
[ENA]
¡û
>C161100142
CP016602
Bacillota
Latilactobacillus curvatus WiKim52 [CP016602]
576261
576349
+
Leu
TAA
[Ensembl]
¡û
>W1610031733
AYZB01000033
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
518
606
+
Leu
TAA
[ENA]
¡û
>W1610034089
AZDL01000141
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
376
464
+
Leu
TAA
[ENA]
¡û
>W1610034099
AZDL01000241
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
253
165
-
Leu
TAA
[ENA]
¡û
>W1610034187
AZDN01000040
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
253
165
-
Leu
TAA
[ENA]
¡û
>W1610036396
AZFG01000057
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
253
165
-
Leu
TAA
[ENA]
¡û
>W1610909560
LSFF01000017
Bacillota
Latilactobacillus sakei [LSFF]
565
653
+
Leu
TAA
[ENA]
¡û
>W1710011236
ANBM01000009
Bacillota
Anaerovibrio sp. JC8 [ANBM]
1085
1173
+
Leu
TAA
[ENA]
¡û
>W1710028660
AYZB01000033
Bacillota
Latilactobacillus graminis DSM 20719 [AYZB]
518
606
+
Leu
TAA
[ENA]
¡û
>W1710031216
AZDL01000141
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
376
464
+
Leu
TAA
[ENA]
¡û
>W1710031226
AZDL01000241
Bacillota
Latilactobacillus curvatus JCM 1096 = DSM 20019 [AZDL]
253
165
-
Leu
TAA
[ENA]
¡û
>W1710031314
AZDN01000040
Bacillota
Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 [AZDN]
253
165
-
Leu
TAA
[ENA]
¡û
>W1710033435
AZFG01000057
Bacillota
Latilactobacillus sakei subsp. carnosus DSM 15831 [AZFG]
253
165
-
Leu
TAA
[ENA]
¡û
>W1710587846
FQYW01000006
Bacillota
Anaerovibrio lipolyticus DSM 3074 [FQYW]
185499
185411
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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