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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49736 (36 seq.)
>W1711337961
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1711338036
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1711338065
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
120441
120352
-
Ser
TGA
[ENA]
¡û
>W1711751596
MUNW01000062
Alphaproteobacteria
Sinorhizobium sp. A49 [MUNW]
74330
74241
-
Ser
TGA
[ENA]
¡û
>C171105033
CP020330
Alphaproteobacteria
Martelella mediterranea DSM 17316 MACL11 [CP020330]
3133236
3133147
-
Ser
TGA
-
¡û
>W131160073
AQWH01000002
Alphaproteobacteria
Martelella mediterranea DSM 17316 [AQWH]
273650
273561
-
Ser
TGA
[ENA]
¡û
>W131163311
AQZQ01000005
Alphaproteobacteria
Ensifer sp. BR816 BR816 [AQZQ]
1543467
1543556
+
Ser
TGA
[ENA]
¡û
>WENV180103372
OAPA01022731
[OAPA] marine metagenome; ENVO:00002010
356
445
+
Ser
TGA
[ENA]
¢þ
>WENV180114529
OAPS01015990
[OAPS] marine metagenome; sea water
247
158
-
Ser
TGA
[ENA]
¢þ
>W141180695
AYGY02000185
Alphaproteobacteria
Martelella sp. AD-3 [AYGY]
4588
4499
-
Ser
TGA
[ENA]
¡û
>WENV170190910
CEPC01173600
[CEPC] marine metagenome genome assembly TARA_064_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
327
238
-
Ser
TGA
[ENA]
¢þ
>WENV170229336
CEQG01106661
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
196
285
+
Ser
TGA
[ENA]
¢þ
>WENV170500219
CEVT01379890
[CEVT] marine metagenome genome assembly TARA_150_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2552
2641
+
Ser
TGA
[ENA]
¢þ
>WENV170529224
CEWJ01115812
[CEWJ] marine metagenome genome assembly TARA_128_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
625
714
+
Ser
TGA
[ENA]
¢þ
>WENV170800695
MDSV01234538
[MDSV] marine metagenome; seawater
72884
72795
-
Ser
TGA
[ENA]
¢þ
>WENV170846063
MDTA01035609
[MDTA] marine metagenome; seawater
747
836
+
Ser
TGA
[ENA]
¢þ
>C181075725
CP023063
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [CP023063]
1672936
1673025
+
Ser
TGA
-
¡û
>C181099201
CP024307
Alphaproteobacteria
Sinorhizobium fredii NXT3 [CP024307]
2031954
2032043
+
Ser
TGA
-
¡û
>W1910636517
LODU01000025
Alphaproteobacteria
Sinorhizobium americanum FG01 [LODU]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W1910636574
LODV01000012
Alphaproteobacteria
Sinorhizobium americanum NG07B [LODV]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W1910658184
MBFK01000008
Alphaproteobacteria
Sinorhizobium shofinae CCBAU 251167 [MBFK]
8126
8215
+
Ser
TGA
[ENA]
¡û
>W1911409625
NWTB01000003
Alphaproteobacteria
Sinorhizobium sp. FG01 [NWTB]
203588
203677
+
Ser
TGA
[ENA]
¡û
>W1911409739
NWTD01000001
Alphaproteobacteria
Sinorhizobium sp. NG07B [NWTD]
1563565
1563476
-
Ser
TGA
[ENA]
¡û
>W1911409957
NWTH01000005
Alphaproteobacteria
Sinorhizobium sp. BJ1 [NWTH]
334575
334486
-
Ser
TGA
[ENA]
¡û
>W1810365595
PVUG01000026
Alphaproteobacteria
Martelella mediterranea USBA-857 [PVUG]
5196
5107
-
Ser
TGA
[ENA]
¡û
>W1810665658
QJNR01000004
Alphaproteobacteria
Ensifer sp. M14 [QJNR]
2951810
2951899
+
Ser
TGA
[ENA]
¡û
>C151072545
CP010803
Alphaproteobacteria
Martelella endophytica YC6887 [CP010803]
3457463
3457374
-
Ser
TGA
[Ensembl]
¡û
>W1511694099
LGAP01000001
Alphaproteobacteria
Ensifer adhaerens SD006 [LGAP]
759427
759338
-
Ser
TGA
[ENA]
¡û
>C121014588
CP003563
Alphaproteobacteria
Sinorhizobium fredii USDA 257 [CP003563]
4218629
4218718
+
Ser
TGA
[Ensembl]
¡û
>C161070389
CP014275
Alphaproteobacteria
Martelella sp. AD-3 [CP014275]
1915403
1915314
-
Ser
TGA
[Ensembl]
¡û
>W121066414
AJQU01000097
Alphaproteobacteria
Sinorhizobium sp. CCBAU 05631 [AJQU]
34792
34703
-
Ser
TGA
[ENA]
¡û
>W1610597376
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
>W1611066889
MBSR01000038
Alphaproteobacteria
Ensifer sp. LC54 [MBSR]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1611066964
MBSS01000045
Alphaproteobacteria
Ensifer sp. LC163 [MBSS]
9242
9331
+
Ser
TGA
[ENA]
¡û
>W1611066993
MBST01000015
Alphaproteobacteria
Ensifer sp. LC384 [MBST]
120441
120352
-
Ser
TGA
[ENA]
¡û
>W1710718700
LFES01000049
Alphaproteobacteria
Alphaproteobacteria bacterium casp-alpha7 [LFES]
5290
5379
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK