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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.49776 (9 seq.)
>C171064532
CP017622
Alphaproteobacteria
Ketogulonicigenium vulgare SPU B805 [CP017622]
1388073
1388162
+
Ser
CGA
-
¡û
>C171101169
CP019937
Alphaproteobacteria
Ketogulonicigenium robustum SPU_B003 [CP019937]
1260008
1259919
-
Ser
CGA
-
¡û
>WENV180014058
FPIC01038840
[FPIC] soil metagenome; Soil
302
391
+
Ser
CGA
[ENA]
¢þ
>WENV170604214
FUWD010374337
[FUWD] metagenome; unknown
503
414
-
Ser
CGA
[ENA]
¢þ
>SRA1052972
SRR035098.310125
454 Sequencing (SRP001819)
53
142
+
Ser
CGA
[SRA]
>C11111800
CP002018
Alphaproteobacteria
Ketogulonicigenium vulgare WSH-001 [CP002018]
843630
843719
+
Ser
CGA
[Ensembl]
¡û
>C11111866
CP002224
Alphaproteobacteria
Ketogulonicigenium vulgare Y25 [CP002224]
1249083
1249172
+
Ser
CGA
[Ensembl]
¡û
>C161047257
CP012908
Alphaproteobacteria
Ketogulonicigenium vulgare Hbe602 [CP012908]
1234010
1234099
+
Ser
CGA
-
¡û
>C161099984
CP016592
Alphaproteobacteria
Ketogulonicigenium vulgare SKV [CP016592]
1233831
1233920
+
Ser
CGA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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