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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.498902 (12 seq.)
>W131169216
AREO01000006
Bacillota
Erysipelothrix tonsillarum DSM 14972 [AREO]
60394
60321
-
Cys
GCA
[ENA]
¡û
>W1711413428
MGWE01000007
Bacillota
Firmicutes bacterium GWE2_51_13 [MGWE]
27981
27908
-
Cys
GCA
[ENA]
¡û
>W1711413481
MGWF01000049
Bacillota
Firmicutes bacterium GWF2_51_9 [MGWF]
48521
48594
+
Cys
GCA
[ENA]
¡û
>C171057469
CP017116
Bacillota
Erysipelothrix rhusiopathiae WH13013 [CP017116]
442480
442407
-
Cys
GCA
-
¡û
>WENV180094491
MTBK01010919
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
147
220
+
Cys
GCA
[ENA]
¢þ
>WENV170690958
LFRM01372976
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
140
67
-
Cys
GCA
[ENA]
¢þ
>WENV170717392
LSQX01034062
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
3919
3992
+
Cys
GCA
[ENA]
¢þ
>C191122105
CP034234
Bacillota
Erysipelothrix piscisicarius 15TAL0474 [CP034234]
158940
158867
-
Cys
GCA
-
¡û
>W09128000
ACLK01000024
Bacillota
Erysipelothrix rhusiopathiae ATCC 19414 [ACLK]
24807
24880
+
Cys
GCA
[ENA]
¡û
>C151007180
CP005079
Bacillota
Erysipelothrix rhusiopathiae SY1027 [CP005079]
1100205
1100132
-
Cys
GCA
[Ensembl]
¡û
>C11108873
AP012027
Bacillota
Erysipelothrix rhusiopathiae str. Fujisawa [AP012027]
1580492
1580419
-
Cys
GCA
[Ensembl]
¡û
>C161078618
CP014861
Bacillota
Erysipelothrix rhusiopathiae GXBY-1 [CP014861]
286016
286089
+
Cys
GCA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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