This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.499230 (114 seq.)
>W1710860659
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97558
97631
+
Gly
TCC
[ENA]
¡û
>W1710863147
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478634
478707
+
Gly
TCC
[ENA]
¡û
>W1710864677
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
18578
18651
+
Gly
TCC
[ENA]
¡û
>W1710867214
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
234028
234101
+
Gly
TCC
[ENA]
¡û
>W1710893491
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
453
380
-
Gly
TCC
[ENA]
¡û
>W131225117
AUDI01000002
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
708
635
-
Gly
TCC
[ENA]
¡û
>C171088483
CP019038
Betaproteobacteria
Massilia putida 6NM-7 [CP019038]
4333103
4333176
+
Gly
TCC
-
¡û
>C010370
CU207211
Betaproteobacteria
Herminiimonas arsenicoxydans [CU207211]
3138278
3138205
-
Gly
TCC
[Ensembl]
¡û
>WENV016252
AACY020459264
Marine microbial communities from Global Ocean Sampling (GOS)
1187
1260
+
Gly
TCC
[ENA]
>WENV180018311
FSYV01000510
[FSYV] metagenome; soil
33375
33448
+
Gly
TCC
[ENA]
¢þ
>WENV180022306
FTFY01000301
[FTFY] metagenome; soil
534
461
-
Gly
TCC
[ENA]
¢þ
>WENV180026557
FTIU01002631
[FTIU] metagenome; soil
122
195
+
Gly
TCC
[ENA]
¢þ
>WENV180032876
FTKD01002429
[FTKD] metagenome; soil
24058
23985
-
Gly
TCC
[ENA]
¢þ
>WENV180036182
FTLB01545769
[FTLB] metagenome; soil
171
98
-
Gly
TCC
[ENA]
¢þ
>WENV180110671
OAPN01003123
[OAPN] marine metagenome; 2011
51
124
+
Gly
TCC
[ENA]
¢þ
>WENV180113251
OAPQ01014913
[OAPQ] marine metagenome; ENVO: 00002149
467
394
-
Gly
TCC
[ENA]
¢þ
>WENV181188320
OEOE01081412
[OEOE] activated sludge metagenome; Activated Sludge
193
120
-
Gly
TCC
[ENA]
¢þ
>WENV181368137
OFQK01000167
[OFQK] freshwater metagenome; Freshwater Lake
276
203
-
Gly
TCC
[ENA]
¢þ
>WENV181368375
OFQL01001493
[OFQL] freshwater metagenome; Freshwater Lake
1059
986
-
Gly
TCC
[ENA]
¢þ
>WENV181368674
OFQN01000018
[OFQN] freshwater metagenome; Freshwater Lake
32738
32665
-
Gly
TCC
[ENA]
¢þ
>WENV181369528
OFQP01006708
[OFQP] freshwater metagenome; Freshwater Lake
856
929
+
Gly
TCC
[ENA]
¢þ
>WENV181369983
OFQR01004315
[OFQR] freshwater metagenome; Freshwater Lake
328
255
-
Gly
TCC
[ENA]
¢þ
>WENV181370366
OFQS01006016
[OFQS] freshwater metagenome; Freshwater Lake
856
929
+
Gly
TCC
[ENA]
¢þ
>WENV181370609
OFQT01000643
[OFQT] freshwater metagenome; Freshwater Lake
1013
1086
+
Gly
TCC
[ENA]
¢þ
>WENV181375379
OFQY01081047
[OFQY] wastewater metagenome; Exp Tend VB 10WW
298
225
-
Gly
TCC
[ENA]
¢þ
>WENV181388117
OFRM01005478
[OFRM] wastewater metagenome; Exp Tend VB 0WW
1285
1358
+
Gly
TCC
[ENA]
¢þ
>WENV181395796
OFSB01004739
[OFSB] freshwater metagenome; Freshwater Lake
680
753
+
Gly
TCC
[ENA]
¢þ
>WENV181398563
OFSE01000200
[OFSE] wastewater metagenome; Exp Tend VB 50WW
15880
15953
+
Gly
TCC
[ENA]
¢þ
>WENV181839319
OGVO01000720
[OGVO] freshwater metagenome; freshwater
905
978
+
Gly
TCC
[ENA]
¢þ
>WENV181843120
OGVU01000944
[OGVU] freshwater metagenome; freshwater
1745
1672
-
Gly
TCC
[ENA]
¢þ
>W141241315
CAHF01000005
Betaproteobacteria
Noviherbaspirillum massiliense JC206 [CAHF]
265
192
-
Gly
TCC
[ENA]
¡û
>WENV182523003
OIWS01003053
[OIWS] human gut metagenome; faeces
447
374
-
Gly
TCC
[ENA]
¢þ
>WENV182553572
OJCR01012341
[OJCR] seawater metagenome; Sea water
1432
1359
-
Gly
TCC
[ENA]
¢þ
>WENV182572254
OJFL01001947
[OJFL] seawater metagenome; Sea water
272
199
-
Gly
TCC
[ENA]
¢þ
>WENV182579400
OJGS01008194
[OJGS] seawater metagenome; Sea water
183
110
-
Gly
TCC
[ENA]
¢þ
>WENV182586768
OJHK01004600
[OJHK] seawater metagenome; Sea water
285
212
-
Gly
TCC
[ENA]
¢þ
>WENV182591131
OJIK01032617
[OJIK] seawater metagenome; Sea water
419
492
+
Gly
TCC
[ENA]
¢þ
>W141258915
CBXX010000031
Betaproteobacteria
Herbaspirillum sp. RV1423 [CBXX]
57847
57920
+
Gly
TCC
[ENA]
¡û
>WENV182896393
OKSN01025146
[OKSN] human gut metagenome; feces
11
84
+
Gly
TCC
[ENA]
¢þ
>WENV183060935
OLHY01015145
[OLHY] seawater metagenome; Sea water
876
949
+
Gly
TCC
[ENA]
¢þ
>WENV183648831
OQVS01044369
[OQVS] human gut metagenome; human gut
426
353
-
Gly
TCC
[ENA]
¢þ
>WENV183650752
OQVT01038520
[OQVT] human gut metagenome; human gut
32
105
+
Gly
TCC
[ENA]
¢þ
>WENV183697810
OUNK010144574
[OUNK] metagenome; soil
411
338
-
Gly
TCC
[ENA]
¢þ
>WENV183697877
OUNK010228191
[OUNK] metagenome; soil
287
360
+
Gly
TCC
[ENA]
¢þ
>WENV183733372
PJTY01001400
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
7917
7990
+
Gly
TCC
[ENA]
¢þ
>WENV183739004
PJUE01000861
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4971
5044
+
Gly
TCC
[ENA]
¢þ
>WENV183744285
PJUK01004678
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
1295
1368
+
Gly
TCC
[ENA]
¢þ
>WENV170140266
CENX01070446
[CENX] marine metagenome genome assembly TARA_018_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
10
83
+
Gly
TCC
[ENA]
¢þ
>WENV170146236
CENZ01042328
[CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
276
203
-
Gly
TCC
[ENA]
¢þ
>W141401163
JDSS02000018
Betaproteobacteria
Candidatus Accumulibacter vicinus sp. SK-01 [JDSS]
289435
289362
-
Gly
TCC
[ENA]
¡û
>W141426809
JEMY01000002
Betaproteobacteria
Candidatus Accumulibacter regalis sp. BA-93 [JEMY]
61553
61626
+
Gly
TCC
[ENA]
¡û
>WENV170535275
CEWP01040522
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
688
761
+
Gly
TCC
[ENA]
¢þ
>WENV170558450
CXWL01071333
[CXWL] groundwater metagenome; biofilm material
4513
4586
+
Gly
TCC
[ENA]
¢þ
>WENV170639359
JFJP01002045
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
386
313
-
Gly
TCC
[ENA]
¢þ
>WENV170639398
JFJP01002384
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
451
378
-
Gly
TCC
[ENA]
¢þ
>WENV170639518
JFJP01003881
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
7140
7213
+
Gly
TCC
[ENA]
¢þ
>WENV170866821
MDTB01137761
[MDTB] marine metagenome; seawater
310
237
-
Gly
TCC
[ENA]
¢þ
>WENV170868655
MDTB01165026
[MDTB] marine metagenome; seawater
187114
187041
-
Gly
TCC
[ENA]
¢þ
>WENV170953884
MEHZ011668676
[MEHZ] marine metagenome; marine surface water
327
254
-
Gly
TCC
[ENA]
¢þ
>WENV170961339
MLJW01000008
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
322
249
-
Gly
TCC
[ENA]
¢þ
>WENV170961418
MLJW01000031
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
203382
203455
+
Gly
TCC
[ENA]
¢þ
>C181071846
CP022736
Betaproteobacteria
Herbaspirillum sp. meg3 [CP022736]
5089445
5089372
-
Gly
TCC
-
¡û
>C191138955
CP035311
Betaproteobacteria
Janthinobacterium sp. 17J80-10 [CP035311]
2620
2547
-
Gly
TCC
-
¡û
>C191157304
CP038026
Betaproteobacteria
Pseudoduganella plicata DSM 17505 [CP038026]
4138564
4138637
+
Gly
TCC
-
¡û
>W09134969
ACVF01000009
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [ACVF]
120503
120576
+
Gly
TCC
[ENA]
¡û
>W141821361
JQNN01000001
Betaproteobacteria
Massilia sp. 9096 [JQNN]
4695812
4695885
+
Gly
TCC
[ENA]
¡û
>WENV025398
AACY020885003
Marine microbial communities from Global Ocean Sampling (GOS)
545
472
-
Gly
TCC
[ENA]
>W1910548748
FZOT01000001
Betaproteobacteria
Noviherbaspirillum humi U15 [FZOT]
358
285
-
Gly
TCC
[ENA]
¡û
>W1910700069
MESE01000010
Betaproteobacteria
Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 [MESE]
422
349
-
Gly
TCC
[ENA]
¡û
>W1911572363
PDBX01000001
Betaproteobacteria
Collimonas sp. PA-H2 [PDBX]
2804624
2804697
+
Gly
TCC
[ENA]
¡û
>W1911647595
QAJP01000003
Betaproteobacteria
Herminiimonas sp. KBW02 [QAJP]
345
272
-
Gly
TCC
[ENA]
¡û
>W1911802790
QYUO01000001
Betaproteobacteria
Noviherbaspirillum saxi K1R23-30 [QYUO]
3260024
3259951
-
Gly
TCC
[ENA]
¡û
>W1911802909
QYUQ01000002
Betaproteobacteria
Noviherbaspirillum sedimenti K1S02-23 [QYUQ]
2800658
2800585
-
Gly
TCC
[ENA]
¡û
>W1810330139
PUIP01000009
Betaproteobacteria
Massilia phosphatilytica 12-OD1 [PUIP]
359
286
-
Gly
TCC
[ENA]
¡û
>W1810659437
QJKB01000002
Betaproteobacteria
Undibacterium pigrum DSM 19792 [QJKB]
871847
871920
+
Gly
TCC
[ENA]
¡û
>W1810672456
QJTL01000002
Betaproteobacteria
Duganella sp. GV083 [QJTL]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810677164
QKMN01000002
Betaproteobacteria
Duganella sp. GV053 [QKMN]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810693400
QLLJ01000002
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810694362
QLLZ01000002
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
759987
760060
+
Gly
TCC
[ENA]
¡û
>W1810787968
QREC01000002
Betaproteobacteria
Duganella sp. GV023 [QREC]
450564
450491
-
Gly
TCC
[ENA]
¡û
>W1810885177
QUND01000002
Betaproteobacteria
Duganella sp. GV046 [QUND]
760377
760450
+
Gly
TCC
[ENA]
¡û
>W1810885811
QUNP01000002
Betaproteobacteria
Duganella sp. GV038 [QUNP]
760377
760450
+
Gly
TCC
[ENA]
¡û
>C151062579
CP009962
Betaproteobacteria
Collimonas arenae Cal35 [CP009962]
457743
457816
+
Gly
TCC
[Ensembl]
¡û
>C151082371
CP011409
Betaproteobacteria
Herbaspirillum hiltneri N3 [CP011409]
4808366
4808293
-
Gly
TCC
-
¡û
>WENV031260
AACY021351668
Marine microbial communities from Global Ocean Sampling (GOS)
331
258
-
Gly
TCC
[ENA]
>C10101128
CP001715
Betaproteobacteria
Candidatus Accumulibacter regalis [CP001715]
4021963
4021890
-
Gly
TCC
[Ensembl]
¡û
>C10111858
CP001965
Betaproteobacteria
Sideroxydans lithotrophicus ES-1 [CP001965]
752886
752959
+
Gly
TCC
[Ensembl]
¡û
>W1511310184
JPQD01000006
Betaproteobacteria
Massilia sp. JS1662 [JPQD]
295
222
-
Gly
TCC
[ENA]
¡û
>W1511683845
LFLT01000055
Betaproteobacteria
Herbaspirillum chlorophenolicum CPW301 [LFLT]
276
203
-
Gly
TCC
[ENA]
¡û
>W1511683887
LFLU01000009
Betaproteobacteria
Herbaspirillum rhizosphaerae UMS-37 [LFLU]
202643
202716
+
Gly
TCC
[ENA]
¡û
>C161043151
CP012640
Betaproteobacteria
Massilia sp. WG5 [CP012640]
524522
524595
+
Gly
TCC
-
¡û
>C161053575
CP013232
Betaproteobacteria
Collimonas fungivorans Ter6 [CP013232]
689287
689360
+
Gly
TCC
[Ensembl]
¡û
>C161053670
CP013234
Betaproteobacteria
Collimonas pratensis Ter91 [CP013234]
487161
487234
+
Gly
TCC
[Ensembl]
¡û
>C161053768
CP013236
Betaproteobacteria
Collimonas pratensis Ter291 [CP013236]
415224
415297
+
Gly
TCC
[Ensembl]
¡û
>WENV057472
AACY023295671
Marine microbial communities from Global Ocean Sampling (GOS)
1141
1214
+
Gly
TCC
[ENA]
>W121061978
AJHH01000675
Betaproteobacteria
Herbaspirillum lusitanum P6-12 [AJHH]
14358
14285
-
Gly
TCC
[ENA]
¡û
>W121085170
AKJA01000073
Betaproteobacteria
Herbaspirillum sp. YR522 [AKJA]
297
224
-
Gly
TCC
[ENA]
¡û
>W121086400
AKJW01000102
Betaproteobacteria
Herbaspirillum sp. CF444 [AKJW]
332
259
-
Gly
TCC
[ENA]
¡û
>W1610506437
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6920
6993
+
Gly
TCC
[ENA]
¡û
>W1610723005
LMDB01000007
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
97558
97631
+
Gly
TCC
[ENA]
¡û
>W1610725493
LMEW01000033
Betaproteobacteria
Massilia sp. Root133 [LMEW]
478634
478707
+
Gly
TCC
[ENA]
¡û
>W1610727023
LMGB01000011
Betaproteobacteria
Massilia sp. Root1485 [LMGB]
18578
18651
+
Gly
TCC
[ENA]
¡û
>W1610729560
LMIC01000003
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
234028
234101
+
Gly
TCC
[ENA]
¡û
>W1610753757
LNEU01000033
Betaproteobacteria
Burkholderiales bacterium Ga0077544 [LNEU]
453
380
-
Gly
TCC
[ENA]
¡û
>WENV080074
AATO01003330
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
125
52
-
Gly
TCC
[ENA]
>W1710498940
FLQX01000155
Betaproteobacteria
Candidatus Accumulibacter aalborgensis sp. S1 [FLQX]
6920
6993
+
Gly
TCC
[ENA]
¡û
>W1710512865
FMZS01000013
Betaproteobacteria
Massilia sp. PDC64 [FMZS]
197757
197830
+
Gly
TCC
[ENA]
¡û
>W1710515871
FNCD01000008
Betaproteobacteria
Duganella sp. OV458 [FNCD]
329520
329593
+
Gly
TCC
[ENA]
¡û
>W1710519295
FNEQ01000004
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
164485
164412
-
Gly
TCC
[ENA]
¡û
>W1710545168
FOBG01000003
Betaproteobacteria
Duganella sp. CF402 [FOBG]
414526
414453
-
Gly
TCC
[ENA]
¡û
>W1710557527
FOLC01000004
Betaproteobacteria
Collimonas sp. OK412 [FOLC]
15712
15785
+
Gly
TCC
[ENA]
¡û
>W1710561500
FOOF01000003
Betaproteobacteria
Duganella sp. CF458 [FOOF]
142362
142289
-
Gly
TCC
[ENA]
¡û
>W1710564238
FOQI01000020
Betaproteobacteria
Collimonas sp. OK307 [FOQI]
84300
84373
+
Gly
TCC
[ENA]
¡û
>W1710593039
FRCX01000012
Betaproteobacteria
Duganella sacchari [FRCX]
182511
182584
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK