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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.501346 (75 seq.)
>W1710871382
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
82757
82686
-
Gly
CCC
[ENA]
¡û
>W1710876903
LMPQ01000010
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
808749
808820
+
Gly
CCC
[ENA]
¡û
>W1710878120
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
2940691
2940762
+
Gly
CCC
[ENA]
¡û
>W1710921175
LNZG01000023
Actinomycetota
Leifsonia xyli subsp. xyli [LNZG]
69378
69305
-
Gly
CCC
[ENA]
¡û
>W1711018547
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
155423
155350
-
Gly
CCC
[ENA]
¡û
>W131162271
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
1455858
1455931
+
Gly
CCC
[ENA]
¡û
>W131184649
ARTB01000003
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
323632
323559
-
Gly
CCC
[ENA]
¡û
>W1711357224
MDHC01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHC]
3208582
3208655
+
Gly
CCC
[ENA]
¡û
>W1711357280
MDHD01000372
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHD]
7935
8008
+
Gly
CCC
[ENA]
¡û
>W1711357303
MDHE01000153
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHE]
31964
31891
-
Gly
CCC
[ENA]
¡û
>W1711357370
MDHF01000267
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHF]
28830
28757
-
Gly
CCC
[ENA]
¡û
>W1711357504
MDHI01000014
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
3823
3750
-
Gly
CCC
[ENA]
¡û
>W1711357506
MDHI01000024
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHI]
447151
447224
+
Gly
CCC
[ENA]
¡û
>W1711357539
MDHJ01000001
Actinomycetota
Clavibacter michiganensis [MDHJ]
3186334
3186407
+
Gly
CCC
[ENA]
¡û
>W1711357629
MDHL01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHL]
3257075
3257148
+
Gly
CCC
[ENA]
¡û
>W1711357673
MDHM01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis [MDHM]
3205263
3205336
+
Gly
CCC
[ENA]
¡û
>W1711360768
MDJX01000314
Actinomycetota
Clavibacter michiganensis [MDJX]
27082
27009
-
Gly
CCC
[ENA]
¡û
>W1711461352
MJGS01000006
Actinomycetota
Frigoribacterium sp. MCBA15_019 [MJGS]
37158
37085
-
Gly
CCC
[ENA]
¡û
>W1711505307
MKVJ01000021
Actinomycetota
Leifsonia sp. 71-9 [MKVJ]
89687
89614
-
Gly
CCC
[ENA]
¡û
>WENV011223
AACY020305925
Marine microbial communities from Global Ocean Sampling (GOS)
1080
1155
+
Gly
CCC
[ENA]
>C006155
AM711867
Actinomycetota
Clavibacter michiganensis subsp. michiganensis NCPPB 382 [AM711867]
3224558
3224631
+
Gly
CCC
[Ensembl]
¡û
>C012827
AE016822
Actinomycetota
Leifsonia xyli subsp. xyli str. CTCB07 [AE016822]
2447451
2447524
+
Gly
CCC
[Ensembl]
¡û
>WENV180016185
FSUF01000022
[FSUF] metagenome; soil
383
312
-
Gly
CCC
[ENA]
¢þ
>WENV180016648
FSVR01000086
[FSVR] metagenome; soil
7992
8065
+
Gly
CCC
[ENA]
¢þ
>WENV180017349
FSWU01000011
[FSWU] metagenome; soil
13883
13954
+
Gly
CCC
[ENA]
¢þ
>WENV180033450
FTKK01000023
[FTKK] metagenome; soil
8905
8978
+
Gly
CCC
[ENA]
¢þ
>WENV180033553
FTKK01438898
[FTKK] metagenome; soil
98
27
-
Gly
CCC
[ENA]
¢þ
>WENV180103064
OAPA01000893
[OAPA] marine metagenome; ENVO:00002010
1722
1651
-
Gly
CCC
[ENA]
¢þ
>WENV180114195
OAPS01000350
[OAPS] marine metagenome; sea water
4297
4368
+
Gly
CCC
[ENA]
¢þ
>WENV180209088
OBAK01014561
[OBAK] marine metagenome; ENVO.00002150
527
598
+
Gly
CCC
[ENA]
¢þ
>WENV180212273
OBAN01003428
[OBAN] marine metagenome; ENVO 00002150
229
158
-
Gly
CCC
[ENA]
¢þ
>WENV180344542
OBLL01031548
[OBLL] soil metagenome; soil
396
469
+
Gly
CCC
[ENA]
¢þ
>WENV180360720
OBNU01014894
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
341
412
+
Gly
CCC
[ENA]
¢þ
>WENV180362045
OBNW01026540
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
138
209
+
Gly
CCC
[ENA]
¢þ
>WENV180394458
OBPS01007086
[OBPS] marine metagenome; ENVO:00002010 seawater
260
189
-
Gly
CCC
[ENA]
¢þ
>WENV180395051
OBPT01000883
[OBPT] marine metagenome; ENVO:00002010 seawater
3009
2938
-
Gly
CCC
[ENA]
¢þ
>W141188410
AYMR01000011
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
40010
40083
+
Gly
CCC
[ENA]
¡û
>C08003559
AM849034
Actinomycetota
Clavibacter michiganensis subsp. sepedonicus ATCC 33113 [AM849034]
3182552
3182625
+
Gly
CCC
[Ensembl]
¡û
>WENV183511990
OMJW01001038
[OMJW] termite gut metagenome; termite gut
1816
1745
-
Gly
CCC
[ENA]
¢þ
>WENV183697799
OUNK010121892
[OUNK] metagenome; soil
2262
2333
+
Gly
CCC
[ENA]
¢þ
>C181048891
CP021034
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-3 [CP021034]
3116793
3116866
+
Gly
CCC
-
¡û
>C181143712
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
106453
106526
+
Gly
CCC
-
¡û
>W141750791
JNSD01000013
Actinomycetota
actinobacterium acMicro-4 [JNSD]
66279
66206
-
Gly
CCC
[ENA]
¡û
>C141007901
CP006734
Actinomycetota
Leifsonia xyli subsp. cynodontis DSM 46306 [CP006734]
2509905
2509978
+
Gly
CCC
[Ensembl]
¡û
>W1910839776
MZMO01000001
Actinomycetota
Clavibacter michiganensis subsp. insidiosus LMG 3663 [MZMO]
323591
323518
-
Gly
CCC
[ENA]
¡û
>W1910839817
MZMP01000001
Actinomycetota
Clavibacter michiganensis subsp. michiganensis LMG 7333 [MZMP]
1142887
1142814
-
Gly
CCC
[ENA]
¡û
>W1911748174
QWEA01000021
Actinomycetota
Clavibacter michiganensis CFBP 6488 [QWEA]
1899
1972
+
Gly
CCC
[ENA]
¡û
>W1911748214
QWEB01000013
Actinomycetota
Clavibacter michiganensis CFBP 7491 [QWEB]
8060
8131
+
Gly
CCC
[ENA]
¡û
>W1911748262
QWEC01000011
Actinomycetota
Clavibacter michiganensis CFBP 7493 [QWEC]
15670
15597
-
Gly
CCC
[ENA]
¡û
>W1911748308
QWED01000009
Actinomycetota
Clavibacter nebraskensis CFBP 7577 [QWED]
930
1003
+
Gly
CCC
[ENA]
¡û
>W1911748365
QWEE01000052
Actinomycetota
Clavibacter californiensis subsp. californiensis CFBP 8216 [QWEE]
8173
8100
-
Gly
CCC
[ENA]
¡û
>W1911749619
QWGT01000023
Actinomycetota
Clavibacter lycopersici CFBP 8615 [QWGT]
7636
7709
+
Gly
CCC
[ENA]
¡û
>W1911749651
QWGU01000009
Actinomycetota
Clavibacter lycopersici CFBP 8616 [QWGU]
6577
6650
+
Gly
CCC
[ENA]
¡û
>W1911749699
QWGV01000020
Actinomycetota
Clavibacter phaseoli subsp. phaseoli CFBP 8627 [QWGV]
5836
5764
-
Gly
CCC
[ENA]
¡û
>W1810090129
PGFF01000001
Actinomycetota
Diaminobutyricimonas aerilata DSM 27393 [PGFF]
3405685
3405758
+
Gly
CCC
[ENA]
¡û
>W1810277238
PSTR01000003
Actinomycetota
Clavibacter michiganensis AY1B2 [PSTR]
15424
15352
-
Gly
CCC
[ENA]
¡û
>W1810277393
PSTV01000001
Actinomycetota
Clavibacter michiganensis Z002 [PSTV]
236040
236113
+
Gly
CCC
[ENA]
¡û
>W1810277483
PSTW01000030
Actinomycetota
Clavibacter michiganensis Z001 [PSTW]
260523
260596
+
Gly
CCC
[ENA]
¡û
>W1810476270
QANL01000001
Actinomycetota
Planctomonas deserti 13S1-3 [QANL]
713521
713592
+
Gly
CCC
[ENA]
¡û
>W1810684456
QKXI01000006
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
119283
119210
-
Gly
CCC
[ENA]
¡û
>C151075651
CP011043
Actinomycetota
Clavibacter michiganensis subsp. insidiosus R1-1 [CP011043]
3130847
3130920
+
Gly
CCC
[Ensembl]
¡û
>C151095711
CP012573
Actinomycetota
Clavibacter capsici PF008 [CP012573]
2978336
2978409
+
Gly
CCC
-
¡û
>W1530032731
LFYU01000307
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
1447
1517
+
Gly
CCC
[ENA]
¡û
>W1511509372
JXQZ01000016
Actinomycetota
Frigoribacterium sp. MEB024 [JXQZ]
20797
20868
+
Gly
CCC
[ENA]
¡û
>W1511570107
LAKL01000027
Actinomycetota
Clavibacter nebraskensis subsp. nebraskensis DOAB 397 [LAKL]
127244
127317
+
Gly
CCC
[ENA]
¡û
>WENV046647
AACY022614388
Marine microbial communities from Global Ocean Sampling (GOS)
208
281
+
Gly
CCC
[ENA]
>WENV047294
AACY022654387
Marine microbial communities from Global Ocean Sampling (GOS)
657
584
-
Gly
CCC
[ENA]
>C161076854
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1960795
1960868
+
Gly
CCC
[Ensembl]
¡û
>WENV058319
AACY023324695
Marine microbial communities from Global Ocean Sampling (GOS)
302
375
+
Gly
CCC
[ENA]
>W1610733728
LMLG01000006
Actinomycetota
Frigoribacterium sp. Leaf44 [LMLG]
82757
82686
-
Gly
CCC
[ENA]
¡û
>W1610739249
LMPQ01000010
Actinomycetota
Frigoribacterium sp. Leaf186 [LMPQ]
808749
808820
+
Gly
CCC
[ENA]
¡û
>W1610740466
LMQR01000001
Actinomycetota
Frigoribacterium sp. Leaf415 [LMQR]
2940691
2940762
+
Gly
CCC
[ENA]
¡û
>W1610867023
LQXA01000019
Actinomycetota
Clavibacter michiganensis subsp. tessellarius [LQXA]
155423
155350
-
Gly
CCC
[ENA]
¡û
>W1710540812
FNXD01000016
Actinomycetota
Leifsonia sp. CL154 [FNXD]
81156
81229
+
Gly
CCC
[ENA]
¡û
>W1710568286
FOTM01000016
Actinomycetota
Leifsonia sp. CL147 [FOTM]
4372
4299
-
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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