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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.502020 (34 seq.)
>C171100908
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
745438
745513
+
Glu
TTC
-
¡û
>C171100909
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
849167
849242
+
Glu
TTC
-
¡û
>C171100911
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
849468
849543
+
Glu
TTC
-
¡û
>C171100913
CP019915
Gammaproteobacteria
Halomonas sp. 'Soap Lake #7' [CP019915]
849756
849831
+
Glu
TTC
-
¡û
>W131196517
ASTJ01000024
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [ASTJ]
198412
198337
-
Glu
TTC
[ENA]
¡û
>W131220987
AUAB01000002
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
262102
262177
+
Glu
TTC
[ENA]
¡û
>WENV170262852
CERC01001100
[CERC] marine metagenome genome assembly TARA_070_MES_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
98
173
+
Glu
TTC
[ENA]
¢þ
>WENV170271323
CERJ01000417
[CERJ] marine metagenome genome assembly TARA_066_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
171
+
Glu
TTC
[ENA]
¢þ
>C181044722
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
745438
745513
+
Glu
TTC
-
¡û
>C181044723
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
849167
849242
+
Glu
TTC
-
¡û
>C181044725
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
849468
849543
+
Glu
TTC
-
¡û
>C181044727
CP020469
Gammaproteobacteria
Halomonas sp. 'Soap Lake #6' [CP020469]
849756
849831
+
Glu
TTC
-
¡û
>C181088228
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2463120
2463195
+
Glu
TTC
-
¡û
>C181088231
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2551433
2551508
+
Glu
TTC
-
¡û
>W141802184
JPEU01000001
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
533515
533440
-
Glu
TTC
[ENA]
¡û
>W141802210
JPEU01000012
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
193226
193301
+
Glu
TTC
[ENA]
¡û
>W141802243
JPEU01001812
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
236
161
-
Glu
TTC
[ENA]
¡û
>W1911411718
NWUX01000011
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
135737
135662
-
Glu
TTC
[ENA]
¡û
>W1911411725
NWUX01000013
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
80767
80842
+
Glu
TTC
[ENA]
¡û
>W1911411739
NWUX01000030
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
44949
45024
+
Glu
TTC
[ENA]
¡û
>W1810177426
PJRN01000003
Gammaproteobacteria
Halomonas saliphila LCB169 [PJRN]
126080
126005
-
Glu
TTC
[ENA]
¡û
>W1810200017
PNRF01000019
Gammaproteobacteria
Halomonas endophytica MC28 [PNRF]
95160
95085
-
Glu
TTC
[ENA]
¡û
>W1810385358
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
1011453
1011528
+
Glu
TTC
[ENA]
¡û
>W1810385360
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
1011634
1011709
+
Glu
TTC
[ENA]
¡û
>W1810385362
PXNS01000001
Gammaproteobacteria
Halomonas litopenaei SYSU ZJ2214 [PXNS]
1011841
1011916
+
Glu
TTC
[ENA]
¡û
>W1810385418
PXNT01000001
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
141086
141011
-
Glu
TTC
[ENA]
¡û
>W1810385422
PXNT01000001
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
140697
140622
-
Glu
TTC
[ENA]
¡û
>W1810608681
QGTM01000043
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
2248
2323
+
Glu
TTC
[ENA]
¡û
>W1810608687
QGTM01000043
Gammaproteobacteria
Halomonas sp. A11-A [QGTM]
2805
2880
+
Glu
TTC
[ENA]
¡û
>W1511319674
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
946902
946827
-
Glu
TTC
[ENA]
¡û
>W1511319675
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
834786
834711
-
Glu
TTC
[ENA]
¡û
>W1511319681
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
833849
833774
-
Glu
TTC
[ENA]
¡û
>W1511398562
JTDR01000003
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
87300
87225
-
Glu
TTC
[ENA]
¡û
>W1511398565
JTDR01000003
Gammaproteobacteria
Halomonas hydrothermalis MTCC 5445 [JTDR]
195
120
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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