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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50222 (60 seq.)
>A171000184
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
85452
85539
+
Leu
CAG
-
¡û
>A171000201
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1221460
1221547
+
Leu
TAG
-
¡û
>A171000501
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
1720592
1720505
-
Leu
CAG
-
¡û
>A171001856
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
104485
104572
+
Leu
CAG
-
¡û
>A171002174
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1548865
1548952
+
Leu
CAG
-
¡û
>A171002281
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
204268
204355
+
Leu
CAG
-
¡û
>A171002292
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
385180
385265
+
Leu
TAG
-
¡û
>A171002583
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1920217
1920130
-
Leu
GAG
-
¡û
>A171002594
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
906296
906209
-
Leu
CAG
-
¡û
>A171002653
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1067455
1067542
+
Leu
TAG
-
¡û
>A171002663
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1276082
1276169
+
Leu
CAG
-
¡û
>A171003292
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
906056
905969
-
Leu
CAG
-
¡û
>A171003317
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1409856
1409943
+
Leu
TAG
-
¡û
>A171003333
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
547847
547760
-
Leu
CAG
-
¡û
>A171003354
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1001567
1001654
+
Leu
TAG
-
¡û
>A171003361
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1870222
1870309
+
Leu
CAG
-
¡û
>A171004202
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
316277
316364
+
Leu
TAG
-
¡û
>A171004241
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
405724
405637
-
Leu
CAG
-
¡û
>A171004287
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1904475
1904562
+
Leu
CAG
-
¡û
>A171004295
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1457458
1457371
-
Leu
TAG
-
¡û
>A171004442
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
963538
963625
+
Leu
CAG
-
¡û
>A171004474
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
42550
42463
-
Leu
TAG
-
¡û
>A171005869
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
500918
501005
+
Leu
CAG
-
¡û
>A171005879
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1584302
1584389
+
Leu
TAG
-
¡û
>A171006341
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
243146
243233
+
Leu
TAG
-
¡û
>A171006381
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
152354
152267
-
Leu
CAG
-
¡û
>A171006456
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
124967
125054
+
Leu
CAG
-
¡û
>A171006575
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
525140
525227
+
Leu
GAG
-
¡û
>A171006586
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1429489
1429576
+
Leu
CAG
-
¡û
>A171006590
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1485208
1485295
+
Leu
TAG
-
¡û
>A171006649
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
1178143
1178230
+
Leu
CAG
-
¡û
>A171007087
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
196480
196567
+
Leu
CAG
-
¡û
>A171007513
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1734000
1733913
-
Leu
TAG
-
¡û
>A171007526
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
976200
976113
-
Leu
CAG
-
¡û
>At1794
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
823197
823284
+
Leu
CAG
[Ensembl]
¡û
>At1838
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1203708
1203795
+
Leu
TAG
[Ensembl]
¡û
>At1867
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1534784
1534697
-
Leu
CAG
[Ensembl]
¡û
>At1882
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
896089
896176
+
Leu
CAG
[Ensembl]
¡û
>At1911
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1448168
1448081
-
Leu
TAG
[Ensembl]
¡û
>At1950
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1250374
1250287
-
Leu
TAG
[Ensembl]
¡û
>At1954
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1326676
1326589
-
Leu
CAG
[Ensembl]
¡û
>WENV170675991
LDZQ01001666
[LDZQ] terrestrial metagenome; oil reservoir sample I2
1394
1307
-
Leu
CAG
[ENA]
¢þ
>WENV170675995
LDZQ01001688
[LDZQ] terrestrial metagenome; oil reservoir sample I2
4268
4181
-
Leu
TAG
[ENA]
¢þ
>WENV170676324
LDZR01002293
[LDZR] terrestrial metagenome; oil reservoir sample K2
5542
5455
-
Leu
CAG
[ENA]
¢þ
>W1910200305
FJMQ01000023
Euryarchaeota
Thermococcus litoralis [FJMQ]
883
970
+
Leu
CAG
[ENA]
¡û
>W1910200319
FJMQ01000103
Euryarchaeota
Thermococcus litoralis [FJMQ]
67977
67890
-
Leu
TAG
[ENA]
¡û
>W1910229963
FOIW01000001
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
53551
53638
+
Leu
TAG
[ENA]
¡û
>W1910229987
FOIW01000002
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
532407
532320
-
Leu
CAG
[ENA]
¡û
>W1610000706
ABSF01000005
Euryarchaeota
Thermococcus barophilus MP [ABSF]
4649
4736
+
Leu
CAG
[ENA]
¡û
>W1610000906
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
175410
175323
-
Leu
CAG
[ENA]
¡û
>W1610000909
ABXN01000016
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
373585
373672
+
Leu
TAG
[ENA]
¡û
>W1610005269
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
126173
126260
+
Leu
CAG
[ENA]
¡û
>W1610005282
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
584572
584485
-
Leu
TAG
[ENA]
¡û
>W1610005579
AKID01000077
Euryarchaeota
Thermococcus sp. PK [AKID]
3771
3858
+
Leu
CAG
[ENA]
¡û
>W1610612453
LGET01000125
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
1394
1307
-
Leu
CAG
[ENA]
¡û
>W1610612457
LGET01000147
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
4268
4181
-
Leu
TAG
[ENA]
¡û
>W1610612829
LGFD01000072
Euryarchaeota
Thermococcus sibiricus [LGFD]
5542
5455
-
Leu
CAG
[ENA]
¡û
>W1610613048
LGFJ01000039
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
7912
7825
-
Leu
CAG
[ENA]
¡û
>W1610717916
LLYW01000008
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
93703
93616
-
Leu
CAG
[ENA]
¡û
>W1610717929
LLYW01000023
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
7182
7269
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK