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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.503534 (69 seq.)
>W1710873073
LMMN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
310591
310516
-
Lys
TTT
[ENA]
¡û
>W1710873214
LMMQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
313522
313447
-
Lys
TTT
[ENA]
¡û
>W1710873700
LMMZ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
213708
213633
-
Lys
TTT
[ENA]
¡û
>W1710873909
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
276616
276541
-
Lys
TTT
[ENA]
¡û
>W1710874182
LMNJ01000053
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
145893
145818
-
Lys
TTT
[ENA]
¡û
>W1710874249
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
122048
122123
+
Lys
TTT
[ENA]
¡û
>W1710874359
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
189397
189472
+
Lys
TTT
[ENA]
¡û
>W1710874423
LMNP01000006
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
189156
189231
+
Lys
TTT
[ENA]
¡û
>W1710874490
LMNQ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
426011
425936
-
Lys
TTT
[ENA]
¡û
>W1710874557
LMNS01000004
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
192167
192242
+
Lys
TTT
[ENA]
¡û
>W1710874678
LMNU01000047
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
175257
175332
+
Lys
TTT
[ENA]
¡û
>W1710875319
LMOH01000003
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
95373
95298
-
Lys
TTT
[ENA]
¡û
>W1710878208
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
137630
137705
+
Lys
TTT
[ENA]
¡û
>W1710878315
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
125937
125862
-
Lys
TTT
[ENA]
¡û
>W1710878680
LMRD01000009
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
178007
178082
+
Lys
TTT
[ENA]
¡û
>W1711078682
LSNC01000045
Alphaproteobacteria
Methylorubrum populi [LSNC]
50298
50373
+
Lys
TTT
[ENA]
¡û
>W1711571767
MNAO01000268
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
6087
6162
+
Lys
TTT
[ENA]
¡û
>W131051740
AMXU01000070
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
10396
10471
+
Lys
TTT
[ENA]
¡û
>W131186632
ARWG01000001
Alphaproteobacteria
Hyphomicrobium sp. 99 [ARWG]
449811
449736
-
Lys
TTT
[ENA]
¡û
>C171092160
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
3852421
3852346
-
Lys
TTT
-
¡û
>C171115198
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
4959804
4959879
+
Lys
TTT
-
¡û
>w001834
AAAP01003560
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
3773
3701
-
Lys
TTT
[ENA]
¡û
>W08002392
ABEX01000003
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
94224
94152
-
Lys
TTT
[ENA]
¡û
>C08006491
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
3419746
3419821
+
Lys
TTT
[Ensembl]
¡û
>W141278843
JAFV01000001
Alphaproteobacteria
Methylopila sp. 73B [JAFV]
498423
498348
-
Lys
TTT
[ENA]
¡û
>C08006639
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
3497624
3497699
+
Lys
TTT
[Ensembl]
¡û
>WENV170590548
FUFK010722251
[FUFK] metagenome; unknown
1774
1699
-
Lys
TTT
[ENA]
¢þ
>C181000352
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
3626949
3627024
+
Lys
TTT
-
¡û
>C181175639
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
3583535
3583610
+
Lys
TTT
-
¡û
>C181227869
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
2458542
2458467
-
Lys
TTT
-
¡û
>W09106867
ABEC01000007
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
145193
145118
-
Lys
TTT
[ENA]
¡û
>W09107170
ABFR01000002
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
111373
111448
+
Lys
TTT
[ENA]
¡û
>W1910006626
BAUX01000008
Alphaproteobacteria
Methylopila sp. Yamaguchi [BAUX]
56561
56636
+
Lys
TTT
[ENA]
¡û
>C09107422
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
3478474
3478549
+
Lys
TTT
[Ensembl]
¡û
>C09107507
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
3784013
3784088
+
Lys
TTT
[Ensembl]
¡û
>C09107609
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
3420732
3420807
+
Lys
TTT
[Ensembl]
¡û
>W1911798335
QYRN01000004
Alphaproteobacteria
Aureimonas flava M2BS4Y-1 [QYRN]
403533
403458
-
Lys
TTT
[ENA]
¡û
>W1810057198
PDHT01000009
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
7576
7501
-
Lys
TTT
[ENA]
¡û
>W1810192895
PKMZ01000001
Alphaproteobacteria
Mangrovicella endophytica 5T4P-12-1 [PKMZ]
1046006
1045931
-
Lys
TTT
[ENA]
¡û
>W1810487194
QAYK01000001
Alphaproteobacteria
Methylobacterium sp. GV104 [QAYK]
178790
178865
+
Lys
TTT
[ENA]
¡û
>W1810658529
QJJJ01000001
Alphaproteobacteria
Methylobacterium sp. B4 [QJJJ]
221409
221334
-
Lys
TTT
[ENA]
¡û
>W1810672694
QJTP01000002
Alphaproteobacteria
Methylobacterium sp. GV094 [QJTP]
178790
178865
+
Lys
TTT
[ENA]
¡û
>SRA1015747
SRR023846.180121
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
96
21
-
Lys
TTT
[SRA]
>C161004968
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
3218516
3218591
+
Lys
TTT
[Ensembl]
¡û
>W1610042979
BAZM01001295
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
997
922
-
Lys
TTT
[ENA]
¡û
>W1610043177
BAZP01000277
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2490
2415
-
Lys
TTT
[ENA]
¡û
>W1610056582
BBWJ01000045
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
87791
87866
+
Lys
TTT
[ENA]
¡û
>W121010680
AGJK01000082
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
21250
21175
-
Lys
TTT
[ENA]
¡û
>W1610735419
LMMN01000001
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
310591
310516
-
Lys
TTT
[ENA]
¡û
>W1610735560
LMMQ01000006
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
313522
313447
-
Lys
TTT
[ENA]
¡û
>W1610736046
LMMZ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
213708
213633
-
Lys
TTT
[ENA]
¡û
>W1610736255
LMNE01000001
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
276616
276541
-
Lys
TTT
[ENA]
¡û
>W1610736528
LMNJ01000053
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
145893
145818
-
Lys
TTT
[ENA]
¡û
>W1610736595
LMNL01000012
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
122048
122123
+
Lys
TTT
[ENA]
¡û
>W1610736705
LMNN01000023
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
189397
189472
+
Lys
TTT
[ENA]
¡û
>W1610736769
LMNP01000006
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
189156
189231
+
Lys
TTT
[ENA]
¡û
>W1610736836
LMNQ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
426011
425936
-
Lys
TTT
[ENA]
¡û
>W1610736903
LMNS01000004
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
192167
192242
+
Lys
TTT
[ENA]
¡û
>W1610737024
LMNU01000047
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
175257
175332
+
Lys
TTT
[ENA]
¡û
>W1610737665
LMOH01000003
Alphaproteobacteria
Aureimonas sp. Leaf324 [LMOH]
95373
95298
-
Lys
TTT
[ENA]
¡û
>W1610740554
LMQT01000019
Alphaproteobacteria
Aureimonas sp. Leaf454 [LMQT]
137630
137705
+
Lys
TTT
[ENA]
¡û
>W1610740661
LMQV01000041
Alphaproteobacteria
Methylobacterium sp. Leaf456 [LMQV]
125937
125862
-
Lys
TTT
[ENA]
¡û
>W1610741026
LMRD01000009
Alphaproteobacteria
Aurantimonas sp. Leaf443 [LMRD]
178007
178082
+
Lys
TTT
[ENA]
¡û
>W1610917592
LSNC01000045
Alphaproteobacteria
Methylorubrum populi [LSNC]
50298
50373
+
Lys
TTT
[ENA]
¡û
>W1710040139
BAZM01001295
Alphaproteobacteria
Methylorubrum rhodinum JCM 2811 [BAZM]
997
922
-
Lys
TTT
[ENA]
¡û
>W1710040337
BAZP01000277
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
2490
2415
-
Lys
TTT
[ENA]
¡û
>W1710053281
BBWJ01000045
Alphaproteobacteria
Aureimonas sp. AU22 [BBWJ]
87791
87866
+
Lys
TTT
[ENA]
¡û
>W1710561280
FOOA01000013
Alphaproteobacteria
Aureimonas phyllosphaerae [FOOA]
94243
94168
-
Lys
TTT
[ENA]
¡û
>W1710567540
FOSV01000005
Alphaproteobacteria
Methylorubrum salsuginis [FOSV]
109326
109251
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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