This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.503567 (37 seq.)
>W1710873118
LMMN01000056
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
866
791
-
Thr
TGT
[ENA]
¡û
>W1710873241
LMMQ01000029
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
231070
231145
+
Thr
TGT
[ENA]
¡û
>W1710874349
LMNN01000019
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
30892
30817
-
Thr
TGT
[ENA]
¡û
>W1710874443
LMNP01000030
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
31129
31054
-
Thr
TGT
[ENA]
¡û
>W1710874496
LMNQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
30949
30874
-
Thr
TGT
[ENA]
¡û
>W1710874563
LMNS01000011
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
14259
14334
+
Thr
TGT
[ENA]
¡û
>W1711078716
LSNC01000124
Alphaproteobacteria
Methylorubrum populi [LSNC]
208148
208223
+
Thr
TGT
[ENA]
¡û
>W1711571754
MNAO01000125
Alphaproteobacteria
Methylorubrum extorquens [MNAO]
1174
1249
+
Thr
TGT
[ENA]
¡û
>W131051731
AMXU01000054
Alphaproteobacteria
Methylobacterium sp. MB200 [AMXU]
108679
108754
+
Thr
TGT
[ENA]
¡û
>C171092154
CP019322
Alphaproteobacteria
Methylorubrum extorquens PSBB040 [CP019322]
4886701
4886626
-
Thr
TGT
-
¡û
>C171115192
CP021054
Alphaproteobacteria
Methylorubrum zatmanii PSBB041 [CP021054]
3908629
3908704
+
Thr
TGT
-
¡û
>w001813
AAAP01001454
Alphaproteobacteria
Paramagnetospirillum magnetotacticum [AAAP]
1074
1151
+
Thr
TGT
[ENA]
¡û
>WENV181227841
OFDN01057187
[OFDN] hot springs metagenome; Water
409
334
-
Thr
TGT
[ENA]
¢þ
>W08002412
ABEX01000009
Alphaproteobacteria
Methylorubrum extorquens CM4 [ABEX]
157256
157184
-
Thr
TGT
[ENA]
¡û
>C08006485
CP000908
Alphaproteobacteria
Methylorubrum extorquens PA1 [CP000908]
2388918
2388993
+
Thr
TGT
[Ensembl]
¡û
>C08006633
CP001029
Alphaproteobacteria
Methylorubrum populi BJ001 [CP001029]
2249485
2249560
+
Thr
TGT
[Ensembl]
¡û
>WENV170593187
FUFK010851996
[FUFK] metagenome; unknown
1098
1023
-
Thr
TGT
[ENA]
¢þ
>C181000346
AP014809
Alphaproteobacteria
Methylorubrum populi P-1M [AP014809]
2422279
2422354
+
Thr
TGT
-
¡û
>W09106834
ABEC01000001
Alphaproteobacteria
Methylorubrum extorquens PA1 [ABEC]
436228
436153
-
Thr
TGT
[ENA]
¡û
>W09107173
ABFR01000003
Alphaproteobacteria
Methylorubrum populi BJ001 [ABFR]
41823
41898
+
Thr
TGT
[ENA]
¡û
>C181175633
CP029173
Alphaproteobacteria
Methylobacterium sp. DM1 [CP029173]
2537514
2537589
+
Thr
TGT
-
¡û
>C181227863
LT962688
Alphaproteobacteria
Methylorubrum extorquens TK 0001 [LT962688]
3524436
3524361
-
Thr
TGT
-
¡û
>C09107416
CP001298
Alphaproteobacteria
Methylorubrum extorquens CM4 [CP001298]
2548474
2548549
+
Thr
TGT
[Ensembl]
¡û
>C09107501
FP103042
Alphaproteobacteria
Methylorubrum extorquens DM4 [FP103042]
2835288
2835363
+
Thr
TGT
[Ensembl]
¡û
>C09107603
CP001510
Alphaproteobacteria
Methylorubrum extorquens AM1 [CP001510]
2207510
2207585
+
Thr
TGT
[Ensembl]
¡û
>W1810763404
QQBB01000002
Alphaproteobacteria
Microvirga subterranea DSM 14364 [QQBB]
408072
407997
-
Thr
TGT
[ENA]
¡û
>C161004962
CP006992
Alphaproteobacteria
Methylobacterium sp. AMS5 [CP006992]
2193438
2193513
+
Thr
TGT
[Ensembl]
¡û
>W1610043181
BAZP01000546
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1614
1539
-
Thr
TGT
[ENA]
¡û
>W121010670
AGJK01000056
Alphaproteobacteria
Methylorubrum extorquens DSM 13060 [AGJK]
16284
16359
+
Thr
TGT
[ENA]
¡û
>W1610735464
LMMN01000056
Alphaproteobacteria
Methylobacterium sp. Leaf90 [LMMN]
866
791
-
Thr
TGT
[ENA]
¡û
>W1610735587
LMMQ01000029
Alphaproteobacteria
Methylobacterium sp. Leaf92 [LMMQ]
231070
231145
+
Thr
TGT
[ENA]
¡û
>W1610736695
LMNN01000019
Alphaproteobacteria
Methylobacterium sp. Leaf119 [LMNN]
30892
30817
-
Thr
TGT
[ENA]
¡û
>W1610736789
LMNP01000030
Alphaproteobacteria
Methylobacterium sp. Leaf121 [LMNP]
31129
31054
-
Thr
TGT
[ENA]
¡û
>W1610736842
LMNQ01000040
Alphaproteobacteria
Methylobacterium sp. Leaf122 [LMNQ]
30949
30874
-
Thr
TGT
[ENA]
¡û
>W1610736909
LMNS01000011
Alphaproteobacteria
Methylobacterium sp. Leaf123 [LMNS]
14259
14334
+
Thr
TGT
[ENA]
¡û
>W1610917626
LSNC01000124
Alphaproteobacteria
Methylorubrum populi [LSNC]
208148
208223
+
Thr
TGT
[ENA]
¡û
>W1710040341
BAZP01000546
Alphaproteobacteria
Methylorubrum thiocyanatum JCM 10893 [BAZP]
1614
1539
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK