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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504022 (70 seq.)
>W1710892688
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
80009
80082
+
Gly
TCC
[ENA]
¡û
>W131046077
AMSB01000011
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os34 [AMSB]
426
353
-
Gly
TCC
[ENA]
¡û
>W131160254
AQWL01000002
Betaproteobacteria
Thiobacillus denitrificans DSM 12475 [AQWL]
454348
454421
+
Gly
TCC
[ENA]
¡û
>W131168094
ARDU01000009
Betaproteobacteria
Thiobacillus thioparus DSM 505 [ARDU]
575
502
-
Gly
TCC
[ENA]
¡û
>W131223579
AUCE01000011
Betaproteobacteria
Azonexus hydrophilus DSM 23864 [AUCE]
705145
705218
+
Gly
TCC
[ENA]
¡û
>W1711386436
MEFI01000007
Betaproteobacteria
Thiobacillus sp. SCN 63-1177 [MEFI]
395
322
-
Gly
TCC
[ENA]
¡û
>W1711386465
MEFK01000267
Betaproteobacteria
Thiobacillus sp. SCN 63-374 [MEFK]
363
290
-
Gly
TCC
[ENA]
¡û
>W1711387312
MEGN01000001
Betaproteobacteria
Thiobacillus sp. SCN 65-179 [MEGN]
394
321
-
Gly
TCC
[ENA]
¡û
>W1711387364
MEGO01000022
Betaproteobacteria
Thiobacillus sp. SCN 64-317 [MEGO]
386
313
-
Gly
TCC
[ENA]
¡û
>W1711430700
MIJG01000001
Betaproteobacteria
Herbaspirillum camelliae WT00C [MIJG]
1053546
1053473
-
Gly
TCC
[ENA]
¡û
>W1711504040
MKUE01000079
Betaproteobacteria
Thiobacillus sp. 65-1059 [MKUE]
134633
134706
+
Gly
TCC
[ENA]
¡û
>W1711504098
MKUF01000015
Betaproteobacteria
Thiobacillus sp. 65-69 [MKUF]
600956
601029
+
Gly
TCC
[ENA]
¡û
>W1711504117
MKUG01000090
Betaproteobacteria
Thiobacillus sp. 65-1402 [MKUG]
25977
26050
+
Gly
TCC
[ENA]
¡û
>W1711506499
MKWL01000019
Betaproteobacteria
Thiobacillus sp. 0-1251 [MKWL]
200775
200848
+
Gly
TCC
[ENA]
¡û
>W1711506533
MKWM01000019
Betaproteobacteria
Thiobacillus sp. 63-78 [MKWM]
425
352
-
Gly
TCC
[ENA]
¡û
>W1711506578
MKWN01000029
Betaproteobacteria
Thiobacillus sp. 65-29 [MKWN]
348
275
-
Gly
TCC
[ENA]
¡û
>W1712110285
NJGU01000016
Betaproteobacteria
Herbaspirillum robiniae HZ10 [NJGU]
96453
96526
+
Gly
TCC
[ENA]
¡û
>C171094890
CP019509
Betaproteobacteria
Aquaspirillum sp. LM1 [CP019509]
215036
215109
+
Gly
TCC
-
¡û
>C007460
CP000089
Betaproteobacteria
Dechloromonas aromatica [CP000089]
347506
347579
+
Gly
TCC
[Ensembl]
¡û
>w028108
ABCT01000002
Betaproteobacteria
Limnobacter sp. MED105 [ABCT]
13349
13279
-
Gly
TCC
[ENA]
¡û
>W141003843
AEEC02000036
Betaproteobacteria
Herbaspirillum frisingense GSF30 [AEEC]
55002
55075
+
Gly
TCC
[ENA]
¡û
>WENV180109692
OAPK01054892
[OAPK] marine metagenome; ENVO:00002042
197
124
-
Gly
TCC
[ENA]
¢þ
>WENV180117954
OARM01004756
[OARM] human gut metagenome; ENVO:feces
209
282
+
Gly
TCC
[ENA]
¢þ
>WENV180256335
OBEQ010807461
[OBEQ] groundwater metagenome; groundwater
202
275
+
Gly
TCC
[ENA]
¢þ
>WENV180295745
OBIZ01284139
[OBIZ] soil metagenome; soil
190
263
+
Gly
TCC
[ENA]
¢þ
>WENV180311309
OBJT01219710
[OBJT] soil metagenome; soil
161
88
-
Gly
TCC
[ENA]
¢þ
>WENV180351426
OBLQ010055700
[OBLQ] soil metagenome; soil
468
395
-
Gly
TCC
[ENA]
¢þ
>WENV181221669
OFCW01000495
[OFCW] microbial mat metagenome; Microbial Mat
144
71
-
Gly
TCC
[ENA]
¢þ
>WENV181372004
OFQW01007171
[OFQW] wastewater metagenome; Exp Tend NO 90WW
1010
937
-
Gly
TCC
[ENA]
¢þ
>WENV181376087
OFQZ01015781
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
1352
1425
+
Gly
TCC
[ENA]
¢þ
>WENV181379078
OFRC01018746
[OFRC] wastewater metagenome; Exp Tend CN 10WW
565
492
-
Gly
TCC
[ENA]
¢þ
>WENV181390495
OFRO01055275
[OFRO] wastewater metagenome; Exp Tend NO 10WW
170
97
-
Gly
TCC
[ENA]
¢þ
>WENV181415015
OGCL01003146
[OGCL] hot springs metagenome; Hot spring water
368
295
-
Gly
TCC
[ENA]
¢þ
>WENV181415707
OGCL01020251
[OGCL] hot springs metagenome; Hot spring water
330
257
-
Gly
TCC
[ENA]
¢þ
>WENV181834817
OGVG01001275
[OGVG] freshwater metagenome; freshwater
866
793
-
Gly
TCC
[ENA]
¢þ
>W141223407
BADF01000432
Betaproteobacteria
Herbaspirillum sp. B39 [BADF]
205
278
+
Gly
TCC
[ENA]
¡û
>W141223505
BADI01000794
Betaproteobacteria
Herbaspirillum sp. B65 [BADI]
1858
1785
-
Gly
TCC
[ENA]
¡û
>WENV182540650
OJAO01000579
[OJAO] seawater metagenome; Sea water
1583
1510
-
Gly
TCC
[ENA]
¢þ
>WENV182586742
OJHK01004085
[OJHK] seawater metagenome; Sea water
1638
1711
+
Gly
TCC
[ENA]
¢þ
>W141277639
JAET01000001
Betaproteobacteria
Dechloromonas agitata is5 [JAET]
533857
533784
-
Gly
TCC
[ENA]
¡û
>WENV183703387
PDVJ01011818
[PDVJ] alkali sediment metagenome; glacial lake sediment
305
378
+
Gly
TCC
[ENA]
¢þ
>WENV183703419
PDVJ01013299
[PDVJ] alkali sediment metagenome; glacial lake sediment
577
650
+
Gly
TCC
[ENA]
¢þ
>WENV183738294
PJUD01152647
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
333
406
+
Gly
TCC
[ENA]
¢þ
>WENV170007586
AMWB02142459
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1132
1205
+
Gly
TCC
[ENA]
¢þ
>WENV170007636
AMWB02147341
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
1170
1097
-
Gly
TCC
[ENA]
¢þ
>WENV170201430
CEPQ01019873
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
261
188
-
Gly
TCC
[ENA]
¢þ
>WENV170201643
CEPQ01041308
[CEPQ] marine metagenome genome assembly TARA_038_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
322
249
-
Gly
TCC
[ENA]
¢þ
>WENV170227985
CEQF01160932
[CEQF] marine metagenome genome assembly TARA_068_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
336
409
+
Gly
TCC
[ENA]
¢þ
>WENV170573163
FLYJ01002197
[FLYJ] hot springs metagenome; Sediment
1708
1781
+
Gly
TCC
[ENA]
¢þ
>WENV170639352
JFJP01002028
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
25549
25622
+
Gly
TCC
[ENA]
¢þ
>WENV170653507
JRYJ01002963
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
10353
10426
+
Gly
TCC
[ENA]
¢þ
>WENV170893156
MDTD01048511
[MDTD] marine metagenome; seawater
974
1047
+
Gly
TCC
[ENA]
¢þ
>C181163946
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
6145540
6145467
-
Gly
TCC
-
¡û
>C191124223
CP034395
Betaproteobacteria
Herbaspirillum seropedicae AU13965 [CP034395]
114871
114944
+
Gly
TCC
-
¡û
>C191150812
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
6539820
6539747
-
Gly
TCC
-
¡û
>C191156611
CP037993
Betaproteobacteria
Herbaspirillum huttiense NFYY 53159 [CP037993]
149341
149414
+
Gly
TCC
-
¡û
>W1910577882
JUGD01000045
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os38 [JUGD]
14861
14934
+
Gly
TCC
[ENA]
¡û
>W1910578312
JWJC01000017
Betaproteobacteria
Herbaspirillum rubrisubalbicans Os44 [JWJC]
432
359
-
Gly
TCC
[ENA]
¡û
>W1910785821
MQVZ01000001
Betaproteobacteria
Limnobacter sp. SAORIC-690 SAORIC-690 [MQVZ]
1358062
1358135
+
Gly
TCC
[ENA]
¡û
>W1810194058
PKOI01000018
Betaproteobacteria
Herbaspirillum sp. BH-1 [PKOI]
26749
26822
+
Gly
TCC
[ENA]
¡û
>W1810195601
PKRR01000003
Betaproteobacteria
Uliginosibacterium sp. TH139 [PKRR]
97770
97697
-
Gly
TCC
[ENA]
¡û
>W1810659739
QJKI01000005
Betaproteobacteria
Rivihabitans pingtungensis DSM 29661 [QJKI]
118728
118655
-
Gly
TCC
[ENA]
¡û
>C151087558
CP011930
Betaproteobacteria
Herbaspirillum seropedicae Z67 [CP011930]
110152
110225
+
Gly
TCC
[Ensembl]
¡û
>W11114405
ADDK02000001
Betaproteobacteria
Azospira oryzae PS [ADDK]
1157390
1157317
-
Gly
TCC
[ENA]
¡û
>C161060431
CP013737
Betaproteobacteria
Herbaspirillum rubrisubalbicans M1 [CP013737]
127548
127621
+
Gly
TCC
[Ensembl]
¡û
>WENV061679
AACY023437260
Marine microbial communities from Global Ocean Sampling (GOS)
830
903
+
Gly
TCC
[ENA]
>W1610752954
LNDZ01000032
Betaproteobacteria
Betaproteobacteria bacterium Ga0074130 [LNDZ]
80009
80082
+
Gly
TCC
[ENA]
¡û
>W1610934869
LUJK01000043
Betaproteobacteria
Limnobacter sp. CACIAM 66H1 [LUJK]
214
141
-
Gly
TCC
[ENA]
¡û
>WENV080165
AATO01010583
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
205
132
-
Gly
TCC
[ENA]
>W1710516924
FNCY01000001
Betaproteobacteria
Propionivibrio dicarboxylicus [FNCY]
737481
737554
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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