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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50437 (69 seq.)
>A171003590
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
2193149
2193238
+
Leu
TAG
-
¡û
>A171004789
CP009506
Euryarchaeota
Methanosarcina siciliae T4/M [CP009506]
4407895
4407981
+
Leu
TAG
-
¡û
>A171004842
CP009507
Euryarchaeota
Methanosarcina siciliae HI350 [CP009507]
4334126
4334212
+
Leu
TAG
-
¡û
>A171004898
CP009508
Euryarchaeota
Methanosarcina siciliae C2J [CP009508]
4791361
4791447
+
Leu
TAG
-
¡û
>A171004974
CP009509
Euryarchaeota
Methanosarcina mazei WWM610 [CP009509]
645279
645194
-
Leu
TAG
-
¡û
>A171005026
CP009511
Euryarchaeota
Methanosarcina mazei SarPi [CP009511]
618852
618767
-
Leu
TAG
-
¡û
>A171005078
CP009512
Euryarchaeota
Methanosarcina mazei S-6 [CP009512]
624186
624101
-
Leu
TAG
-
¡û
>A171005130
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
617022
616937
-
Leu
TAG
-
¡û
>A171005289
CP009516
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [CP009516]
720203
720117
-
Leu
TAG
-
¡û
>A171005315
CP009517
Euryarchaeota
Methanosarcina barkeri 3 [CP009517]
3838114
3838201
+
Leu
TAG
-
¡û
>At0979
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2437020
2437107
+
Leu
TAG
[Ensembl]
¡û
>At1511
AE008384
Euryarchaeota
Methanosarcina mazei Go1 [AE008384]
945437
945521
+
Leu
TAG
[Ensembl]
¡û
>WENV170723176
LSQX01257633
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
30541
30456
-
Leu
TAG
[ENA]
¢þ
>WENV170784213
MCHG01000126
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
18583
18669
+
Leu
TAG
[ENA]
¢þ
>W1910569256
JJOR01000130
Euryarchaeota
Methanosarcina mazei 2.F.A.2.3 [JJOR]
4219
4304
+
Leu
TAG
[ENA]
¡û
>W1910569304
JJOS01000066
Euryarchaeota
Methanosarcina mazei 2.F.A.2.4 [JJOS]
4238
4323
+
Leu
TAG
[ENA]
¡û
>W1910569341
JJOT01000022
Euryarchaeota
Methanosarcina mazei 2.F.T.0.2 [JJOT]
45983
45898
-
Leu
TAG
[ENA]
¡û
>W1910569382
JJOU01000020
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
19190
19275
+
Leu
TAG
[ENA]
¡û
>W1910569485
JJOW01000092
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.15 [JJOW]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569576
JJOX01000091
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.3 [JJOX]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569598
JJOY01000020
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.6 [JJOY]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569652
JJOZ01000033
Euryarchaeota
Methanosarcina sp. 2.H.T.1A.8 [JJOZ]
13869
13955
+
Leu
TAG
[ENA]
¡û
>W1910569731
JJPA01000250
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.1 [JJPA]
4237
4322
+
Leu
TAG
[ENA]
¡û
>W1910569781
JJPB01000133
Euryarchaeota
Methanosarcina mazei 3.F.A.1A.3 [JJPB]
16293
16208
-
Leu
TAG
[ENA]
¡û
>W1910569822
JJPC01000117
Euryarchaeota
Methanosarcina mazei 3.F.A.1B.1 [JJPC]
4331
4416
+
Leu
TAG
[ENA]
¡û
>W1910569850
JJPD01000080
Euryarchaeota
Methanosarcina mazei 3.F.A.2.12 [JJPD]
16281
16196
-
Leu
TAG
[ENA]
¡û
>W1910569916
JJPE01000094
Euryarchaeota
Methanosarcina mazei 3.F.A.2.3 [JJPE]
16281
16196
-
Leu
TAG
[ENA]
¡û
>W1910569992
JJPG01000004
Euryarchaeota
Methanosarcina mazei 3.F.A.2.6 [JJPG]
16277
16192
-
Leu
TAG
[ENA]
¡û
>W1910570177
JJPJ01000074
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.2 [JJPJ]
3927
4012
+
Leu
TAG
[ENA]
¡û
>W1910570279
JJPL01000130
Euryarchaeota
Methanosarcina mazei 3.F.T.2.1 [JJPL]
4330
4415
+
Leu
TAG
[ENA]
¡û
>W1910570323
JJPM01000180
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.1 [JJPM]
17119
17034
-
Leu
TAG
[ENA]
¡û
>W1910570393
JJPN01000156
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
19190
19275
+
Leu
TAG
[ENA]
¡û
>W1910570445
JJPO01000149
Euryarchaeota
Methanosarcina mazei 3.H.A.2.1 [JJPO]
93313
93228
-
Leu
TAG
[ENA]
¡û
>W1910570449
JJPP01000015
Euryarchaeota
Methanosarcina mazei 3.H.A.2.4 [JJPP]
4241
4326
+
Leu
TAG
[ENA]
¡û
>W1910570516
JJPQ01000047
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
16281
16196
-
Leu
TAG
[ENA]
¡û
>W1910570553
JJPR01000022
Euryarchaeota
Methanosarcina mazei 3.H.A.2.6 [JJPR]
16368
16283
-
Leu
TAG
[ENA]
¡û
>W1910570623
JJPS01000117
Euryarchaeota
Methanosarcina mazei 3.H.A.2.8 [JJPS]
14031
14116
+
Leu
TAG
[ENA]
¡û
>W1910570670
JJPT01000078
Euryarchaeota
Methanosarcina mazei 3.H.M.1A.1 [JJPT]
4924
5009
+
Leu
TAG
[ENA]
¡û
>W1910570773
JJPV01000051
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.2 [JJPV]
20568
20653
+
Leu
TAG
[ENA]
¡û
>W1910570829
JJPW01000053
Euryarchaeota
Methanosarcina mazei 3.H.M.1B.5 [JJPW]
4027
4112
+
Leu
TAG
[ENA]
¡û
>W1910570895
JJPX01000172
Euryarchaeota
Methanosarcina mazei 3.H.M.2.7 [JJPX]
4123
4208
+
Leu
TAG
[ENA]
¡û
>W1910570931
JJPY01000067
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
16294
16209
-
Leu
TAG
[ENA]
¡û
>W1910570952
JJPZ01000007
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
19150
19235
+
Leu
TAG
[ENA]
¡û
>W1910571020
JJQA01000076
Euryarchaeota
Methanosarcina mazei 1.F.A.1A.3 [JJQA]
4151
4236
+
Leu
TAG
[ENA]
¡û
>W1910571218
JJQE01000081
Euryarchaeota
Methanosarcina mazei 1.F.M.0.5 [JJQE]
18971
19056
+
Leu
TAG
[ENA]
¡û
>W1910571314
JJQG01000062
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.1 [JJQG]
4361
4446
+
Leu
TAG
[ENA]
¡û
>W1910571397
JJQH01000190
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.3 [JJQH]
4273
4358
+
Leu
TAG
[ENA]
¡û
>W1910571420
JJQI01000026
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.4 [JJQI]
323041
322956
-
Leu
TAG
[ENA]
¡û
>W1910571472
JJQJ01000087
Euryarchaeota
Methanosarcina mazei 1.H.A.1A.6 [JJQJ]
4241
4326
+
Leu
TAG
[ENA]
¡û
>W1910571522
JJQK01000054
Euryarchaeota
Methanosarcina mazei 1.H.A.2.1 [JJQK]
4027
4112
+
Leu
TAG
[ENA]
¡û
>W1910571573
JJQL01000015
Euryarchaeota
Methanosarcina sp. 1.H.A.2.2 [JJQL]
65593
65679
+
Leu
TAG
[ENA]
¡û
>W1910571677
JJQM01000170
Euryarchaeota
Methanosarcina mazei 1.H.A.2.3 [JJQM]
4219
4304
+
Leu
TAG
[ENA]
¡û
>W1910571722
JJQN01000132
Euryarchaeota
Methanosarcina mazei 1.H.A.2.6 [JJQN]
4056
4141
+
Leu
TAG
[ENA]
¡û
>W1910571756
JJQO01000088
Euryarchaeota
Methanosarcina mazei 1.H.A.2.7 [JJQO]
4226
4311
+
Leu
TAG
[ENA]
¡û
>W1910571822
JJQP01000160
Euryarchaeota
Methanosarcina mazei 1.H.A.2.8 [JJQP]
572
657
+
Leu
TAG
[ENA]
¡û
>W1910571881
JJQQ01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.0.1 [JJQQ]
25757
25672
-
Leu
TAG
[ENA]
¡û
>W1910571932
JJQR01000097
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.1 [JJQR]
4228
4313
+
Leu
TAG
[ENA]
¡û
>W1910571976
JJQS01000061
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.2 [JJQS]
4361
4446
+
Leu
TAG
[ENA]
¡û
>W1910572013
JJQT01000044
Euryarchaeota
Methanosarcina mazei 1.H.M.1A.3 [JJQT]
9275
9190
-
Leu
TAG
[ENA]
¡û
>W1910572143
JJQV01000104
Euryarchaeota
Methanosarcina mazei 1.H.M.2.2 [JJQV]
104071
103986
-
Leu
TAG
[ENA]
¡û
>W1910572162
JJQW01000029
Euryarchaeota
Methanosarcina mazei 1.H.M.2.3 [JJQW]
4291
4376
+
Leu
TAG
[ENA]
¡û
>W1910572223
JJQX01000094
Euryarchaeota
Methanosarcina mazei 1.H.M.2.4 [JJQX]
22708
22623
-
Leu
TAG
[ENA]
¡û
>W1910572288
JJQY01000147
Euryarchaeota
Methanosarcina sp. 1.H.T.1A.1 [JJQY]
133373
133459
+
Leu
TAG
[ENA]
¡û
>W1910572326
JJQZ01000111
Euryarchaeota
Methanosarcina mazei 1.H.T.2.1 [JJQZ]
4345
4430
+
Leu
TAG
[ENA]
¡û
>W1910572388
JJRA01000121
Euryarchaeota
Methanosarcina mazei 1.H.T.2.3 [JJRA]
56005
55920
-
Leu
TAG
[ENA]
¡û
>W1910572424
JJRB01000084
Euryarchaeota
Methanosarcina mazei 1.H.T.2.5 [JJRB]
104092
104007
-
Leu
TAG
[ENA]
¡û
>W1910575036
JQLR01000001
Euryarchaeota
Methanosarcina soligelidi SMA-21 [JQLR]
254828
254913
+
Leu
TAG
[ENA]
¡û
>W1910694776
MDTP02000052
Euryarchaeota
Methanosarcina sp. Ant1 [MDTP]
49782
49868
+
Leu
TAG
[ENA]
¡û
>W1610000153
AADH02000014
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
25093
25006
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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