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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504643 (33 seq.)
>W131158410
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
75119
75192
+
Gly
GCC
[ENA]
¡û
>W131158413
AQUA01000008
Actinomycetota
actinobacterium SCGC AAA278-O22 [AQUA]
81795
81868
+
Gly
GCC
[ENA]
¡û
>WENV180115278
OAPS01190136
[OAPS] marine metagenome; sea water
192
119
-
Gly
GCC
[ENA]
¢þ
>WENV181370398
OFQS01008393
[OFQS] freshwater metagenome; Freshwater Lake
859
932
+
Gly
GCC
[ENA]
¢þ
>WENV181400582
OFSF01011423
[OFSF] wastewater metagenome; Exp Tend VB 100WW
841
914
+
Gly
GCC
[ENA]
¢þ
>WENV181836323
OGVJ01004651
[OGVJ] freshwater metagenome; freshwater
159
86
-
Gly
GCC
[ENA]
¢þ
>WENV181843225
OGVU01003963
[OGVU] freshwater metagenome; freshwater
407
482
+
Gly
GCC
[ENA]
¢þ
>WENV181846121
OGVX01020914
[OGVX] freshwater metagenome; freshwater
423
350
-
Gly
GCC
[ENA]
¢þ
>WENV181855735
OGWM01001122
[OGWM] freshwater metagenome; freshwater
1567
1494
-
Gly
GCC
[ENA]
¢þ
>WENV170572616
FLOH01001029
[FLOH] marine metagenome; water
1499
1426
-
Gly
GCC
[ENA]
¢þ
>WENV170600169
FUWD010111691
[FUWD] metagenome; unknown
425
352
-
Gly
GCC
[ENA]
¢þ
>WENV170602035
FUWD010211193
[FUWD] metagenome; unknown
820
747
-
Gly
GCC
[ENA]
¢þ
>WENV170602669
FUWD010252157
[FUWD] metagenome; unknown
307
380
+
Gly
GCC
[ENA]
¢þ
>WENV170618332
FUWD012963054
[FUWD] metagenome; unknown
726
653
-
Gly
GCC
[ENA]
¢þ
>WENV170625828
FUWD013206723
[FUWD] metagenome; unknown
321
394
+
Gly
GCC
[ENA]
¢þ
>WENV170634048
FUWD013408469
[FUWD] metagenome; unknown
321
394
+
Gly
GCC
[ENA]
¢þ
>WENV170645479
JNSK01000003
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
1911
1984
+
Gly
GCC
[ENA]
¢þ
>WENV170645499
JNSK01000020
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
47184
47257
+
Gly
GCC
[ENA]
¢þ
>WENV170645535
JNSK01000085
[JNSK] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
8709
8636
-
Gly
GCC
[ENA]
¢þ
>C181018666
CP015603
Actinomycetota
Actinobacteria bacterium IMCC25003 [CP015603]
811310
811237
-
Gly
GCC
-
¡û
>C181018700
CP015604
Actinomycetota
Actinobacteria bacterium IMCC26103 [CP015604]
934407
934334
-
Gly
GCC
-
¡û
>C181020845
CP016769
Actinomycetota
Candidatus Planktophila lacus [CP016769]
794856
794929
+
Gly
GCC
-
¡û
>C181020882
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
746006
746079
+
Gly
GCC
-
¡û
>C181020956
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
751896
751969
+
Gly
GCC
-
¡û
>C181020992
CP016773
Actinomycetota
Candidatus Planktophila sulfonica [CP016773]
741975
742048
+
Gly
GCC
-
¡û
>C181021028
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
712858
712931
+
Gly
GCC
-
¡û
>C181021066
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
706901
706974
+
Gly
GCC
-
¡û
>C181021140
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
731826
731899
+
Gly
GCC
-
¡û
>C181021176
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
711264
711337
+
Gly
GCC
-
¡û
>C181021254
CP016780
Actinomycetota
Candidatus Planktophila lacus [CP016780]
755518
755591
+
Gly
GCC
-
¡û
>C181021290
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
689861
689934
+
Gly
GCC
-
¡û
>C181021367
CP016783
Actinomycetota
Candidatus Planktophila lacus [CP016783]
766917
766990
+
Gly
GCC
-
¡û
>WENV058267
AACY023323107
Marine microbial communities from Global Ocean Sampling (GOS)
595
670
+
Gly
GCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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