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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504644 (10 seq.)
>W131158427
AQUB01000007
Actinomycetota
actinobacterium SCGC AAA023-J06 [AQUB]
15467
15394
-
Lys
CTT
[ENA]
¡û
>WENV181395827
OFSB01007237
[OFSB] freshwater metagenome; Freshwater Lake
154
81
-
Lys
CTT
[ENA]
¢þ
>C181020888
CP016770
Actinomycetota
Candidatus Planktophila dulcis [CP016770]
964276
964349
+
Lys
CTT
-
¡û
>C181020962
CP016772
Actinomycetota
Candidatus Planktophila dulcis [CP016772]
971179
971252
+
Lys
CTT
-
¡û
>C181021034
CP016774
Actinomycetota
Candidatus Planktophila versatilis [CP016774]
925702
925775
+
Lys
CTT
-
¡û
>C181021072
CP016775
Actinomycetota
Candidatus Planktophila versatilis [CP016775]
920739
920812
+
Lys
CTT
-
¡û
>C181021146
CP016777
Actinomycetota
Candidatus Planktophila dulcis [CP016777]
950549
950622
+
Lys
CTT
-
¡û
>C181021182
CP016778
Actinomycetota
Candidatus Planktophila versatilis [CP016778]
922869
922942
+
Lys
CTT
-
¡û
>C181021296
CP016781
Actinomycetota
Candidatus Planktophila versatilis [CP016781]
894520
894593
+
Lys
CTT
-
¡û
>WENV047220
AACY022647876
Marine microbial communities from Global Ocean Sampling (GOS)
103
180
+
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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