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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.504673 (31 seq.)
>C171119001
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1828648
1828723
+
Trp
CCA
-
¡û
>C171119025
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
1972527
1972602
+
Trp
CCA
-
¡û
>C171119129
CP021434
Bacillota
Tumebacillus avium AR23208 [CP021434]
3817498
3817573
+
Trp
CCA
-
¡û
>WENV180042746
LQAG01000367
[LQAG] bioreactor metagenome; bioreactor_3 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
120
194
+
Trp
CCA
[ENA]
¢þ
>WENV180447147
OBXC01017731
[OBXC] human gut metagenome; faeces
246
174
-
Trp
CCA
[ENA]
¢þ
>WENV180455569
OBXO01010772
[OBXO] human gut metagenome; faeces
147
75
-
Trp
CCA
[ENA]
¢þ
>W08002198
ABEQ01000019
Bacillota
Candidatus Epulopiscium viviparus 'N.t. morphotype B' [ABEQ]
1355
1428
+
Trp
CCA
[ENA]
¡û
>WENV182409673
OIFJ01000091
[OIFJ] human gut metagenome; stool
78881
78809
-
Trp
CCA
[ENA]
¢þ
>WENV183173549
OLPD01011099
[OLPD] human gut metagenome; faeces
103
178
+
Trp
CCA
[ENA]
¢þ
>WENV183705169
PDWI01001171
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
42223
42297
+
Trp
CCA
[ENA]
¢þ
>WENV183706650
PDWI01005015
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
11058
10986
-
Trp
CCA
[ENA]
¢þ
>WENV183706975
PDWI01006173
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
16693
16765
+
Trp
CCA
[ENA]
¢þ
>WENV183707925
PDWI01011545
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
9673
9601
-
Trp
CCA
[ENA]
¢þ
>WENV183709741
PDWI01033031
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
4554
4626
+
Trp
CCA
[ENA]
¢þ
>WENV183711549
PDWI01072636
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2651
2579
-
Trp
CCA
[ENA]
¢þ
>WENV183713430
PDWI01138236
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1639
1711
+
Trp
CCA
[ENA]
¢þ
>WENV183714308
PDWI01177387
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1362
1434
+
Trp
CCA
[ENA]
¢þ
>WENV183716205
PDWI01293674
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
413
341
-
Trp
CCA
[ENA]
¢þ
>WENV183747284
PPCM01000702
[PPCM] marine sediment metagenome; marine sediment
176
104
-
Trp
CCA
[ENA]
¢þ
>WENV170014512
AYRG01005516
[AYRG] bioreactor metagenome; day 33 sample from continuous culture bioreactor with low C:N ratio inoculated with sediment
137
65
-
Trp
CCA
[ENA]
¢þ
>WENV170635168
JDSF01000159
[JDSF] bioreactor metagenome; continuous culture bioreactor denitrification-DNRA
44778
44852
+
Trp
CCA
[ENA]
¢þ
>WENV170785049
MDSP01000001
[MDSP] gut metagenome; Stomach gut content
21567
21495
-
Trp
CCA
[ENA]
¢þ
>WENV170785070
MDSP01000032
[MDSP] gut metagenome; Stomach gut content
12301
12227
-
Trp
CCA
[ENA]
¢þ
>C181070277
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4329331
4329256
-
Trp
CCA
-
¡û
>C181070301
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
4129722
4129647
-
Trp
CCA
-
¡û
>C181070377
CP022657
Bacillota
Tumebacillus algifaecis THMBR28 [CP022657]
2608647
2608572
-
Trp
CCA
-
¡û
>C191193275
LR130778
Bacillota
Petrocella atlantisensis [LR130778]
2905610
2905682
+
Trp
CCA
-
¡û
>W1910217703
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
631
705
+
Trp
CCA
[ENA]
¡û
>W1910217708
FMMP01000020
Bacillota
Cellulosilyticum sp. I15G10I2 [FMMP]
1824
1898
+
Trp
CCA
[ENA]
¡û
>W1810250647
PQDH01000001
Bacillota
Vallitalea okinawensis S15 [PQDH]
674902
674830
-
Trp
CCA
[ENA]
¡û
>W1810250651
PQDH01000001
Bacillota
Vallitalea okinawensis S15 [PQDH]
669644
669570
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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