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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.506081 (50 seq.)
>W1710821623
LKTU01000015
Betaproteobacteria
Variovorax paradoxus [LKTU]
74436
74511
+
Val
TAC
[ENA]
¡û
>W1710821685
LKTV01000032
Betaproteobacteria
Variovorax paradoxus [LKTV]
7391
7466
+
Val
TAC
[ENA]
¡û
>W1710821746
LKTW01000103
Betaproteobacteria
Variovorax paradoxus [LKTW]
26499
26424
-
Val
TAC
[ENA]
¡û
>W1710821782
LKTX01000018
Betaproteobacteria
Variovorax paradoxus [LKTX]
7370
7445
+
Val
TAC
[ENA]
¡û
>W1710821826
LKTY01000008
Betaproteobacteria
Variovorax paradoxus [LKTY]
41881
41956
+
Val
TAC
[ENA]
¡û
>W1710821877
LKTZ01000006
Betaproteobacteria
Variovorax paradoxus [LKTZ]
81340
81265
-
Val
TAC
[ENA]
¡û
>W1710860146
LMCQ01000021
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
225151
225076
-
Val
TAC
[ENA]
¡û
>W1710882340
LMTS01000247
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
57943
58018
+
Val
TAC
[ENA]
¡û
>W1710954145
LOWY01000016
Betaproteobacteria
Burkholderia sp. FL-7-2-10-S1-D7 [LOWY]
94772
94847
+
Val
TAC
[ENA]
¡û
>C171066932
CP017748
Betaproteobacteria
Cupriavidus sp. USMAA2-4 [CP017748, CP017749]
232700
232775
+
Val
TAC
-
¡û
>C171067041
CP017751
Betaproteobacteria
Cupriavidus sp. USMAHM13 [CP017751, CP017752]
2606085
2606010
-
Val
TAC
-
¡û
>C171067120
CP017754
Betaproteobacteria
Cupriavidus malaysiensis USMAA1020 [CP017754, CP017755]
2655408
2655333
-
Val
TAC
-
¡û
>W131174647
ARIP01000071
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
149194
149119
-
Val
TAC
[ENA]
¡û
>W131180338
ARNA01000042
Betaproteobacteria
Variovorax paradoxus 110B [ARNA]
162739
162814
+
Val
TAC
[ENA]
¡û
>W141170118
AXXB01000004
Betaproteobacteria
Variovorax sp. JGI 0001016-C20 [AXXB]
17166
17091
-
Val
TAC
[ENA]
¡û
>W141170127
AXXC01000069
Betaproteobacteria
Variovorax sp. JGI 0001014-H11 [AXXC]
3831
3756
-
Val
TAC
[ENA]
¡û
>W141170151
AXXG01000007
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
36241
36166
-
Val
TAC
[ENA]
¡û
>WENV170706739
LNAP01006019
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
3556
3481
-
Val
TAC
[ENA]
¢þ
>W09119963
ACEE01000073
Betaproteobacteria
Variovorax paradoxus S110 [ACEE]
14549
14474
-
Val
TAC
[ENA]
¡û
>C191161465
CP038635
Betaproteobacteria
Cupriavidus oxalaticus X32 [CP038634, CP038635]
1397349
1397424
+
Val
TAC
-
¡û
>W141558062
JHVQ01000003
Betaproteobacteria
Variovorax sp. URHB0020 [JHVQ]
353889
353964
+
Val
TAC
[ENA]
¡û
>W141818189
JQLI01000008
Betaproteobacteria
Cupriavidus necator A5-1 [JQLI]
1905738
1905813
+
Val
TAC
[ENA]
¡û
>C141002543
CP003911
Betaproteobacteria
Variovorax paradoxus B4 [CP003911, CP003912]
2009418
2009493
+
Val
TAC
[Ensembl]
¡û
>C09111092
CP001635
Betaproteobacteria
Variovorax paradoxus [CP001635]
1927074
1927149
+
Val
TAC
[Ensembl]
¡û
>W1810046165
NNBQ01000002
Betaproteobacteria
Variovorax sp. B4 [NNBQ]
523755
523830
+
Val
TAC
[ENA]
¡û
>W1810046262
NNBR01000002
Betaproteobacteria
Variovorax sp. B2 [NNBR]
523767
523842
+
Val
TAC
[ENA]
¡û
>W1810392067
PXZZ01000065
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
11259
11184
-
Val
TAC
[ENA]
¡û
>W1810486651
QAYA01000002
Betaproteobacteria
Variovorax sp. GV040 [QAYA]
267524
267599
+
Val
TAC
[ENA]
¡û
>W1810672526
QJTM01000003
Betaproteobacteria
Variovorax sp. GV035 [QJTM]
267524
267599
+
Val
TAC
[ENA]
¡û
>W1810676090
QKLT01000002
Betaproteobacteria
Variovorax sp. GV042 [QKLT]
267524
267599
+
Val
TAC
[ENA]
¡û
>W1810682472
QKUE01000004
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
267524
267599
+
Val
TAC
[ENA]
¡û
>W1511352955
JROV01000223
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
1469
1394
-
Val
TAC
[ENA]
¡û
>W1511554993
JZWI01000012
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
88755
88830
+
Val
TAC
[ENA]
¡û
>C161073168
CP014517
Betaproteobacteria
Variovorax sp. PAMC 28711 [CP014517]
3488397
3488472
+
Val
TAC
[Ensembl]
¡û
>W1610047757
BBDP01000548
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
580
655
+
Val
TAC
[ENA]
¡û
>W1610072194
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
818093
818018
-
Val
TAC
[ENA]
¡û
>W1610685585
LKTU01000015
Betaproteobacteria
Variovorax paradoxus [LKTU]
74436
74511
+
Val
TAC
[ENA]
¡û
>W1610685647
LKTV01000032
Betaproteobacteria
Variovorax paradoxus [LKTV]
7391
7466
+
Val
TAC
[ENA]
¡û
>W1610685708
LKTW01000103
Betaproteobacteria
Variovorax paradoxus [LKTW]
26499
26424
-
Val
TAC
[ENA]
¡û
>W1610685744
LKTX01000018
Betaproteobacteria
Variovorax paradoxus [LKTX]
7370
7445
+
Val
TAC
[ENA]
¡û
>W1610685788
LKTY01000008
Betaproteobacteria
Variovorax paradoxus [LKTY]
41881
41956
+
Val
TAC
[ENA]
¡û
>W1610685839
LKTZ01000006
Betaproteobacteria
Variovorax paradoxus [LKTZ]
81340
81265
-
Val
TAC
[ENA]
¡û
>W1610722492
LMCQ01000021
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
225151
225076
-
Val
TAC
[ENA]
¡û
>W1610744266
LMTS01000247
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
57943
58018
+
Val
TAC
[ENA]
¡û
>W1610810255
LOWY01000016
Betaproteobacteria
Burkholderia sp. FL-7-2-10-S1-D7 [LOWY]
94772
94847
+
Val
TAC
[ENA]
¡û
>W1710044267
BBDP01000548
Betaproteobacteria
Variovorax sp. RA8 [BBDP]
580
655
+
Val
TAC
[ENA]
¡û
>W1710069396
BCUT01000001
Betaproteobacteria
Variovorax paradoxus NBRC 15149 [BCUT]
818093
818018
-
Val
TAC
[ENA]
¡û
>W1710517926
FNDR01000001
Betaproteobacteria
Variovorax sp. OV700 [FNDR]
485108
485033
-
Val
TAC
[ENA]
¡û
>W1710569259
FOUG01000006
Betaproteobacteria
Variovorax sp. OV329 [FOUG]
128537
128612
+
Val
TAC
[ENA]
¡û
>W1710571864
FOWG01000003
Betaproteobacteria
Variovorax sp. PDC80 [FOWG]
444059
443984
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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