This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508107 (74 seq.)
>W1710805082
LJZS01000011
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
105806
105733
-
Cys
GCA
[ENA]
¡û
>W1710943758
LOPZ01000013
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
18270
18197
-
Cys
GCA
[ENA]
¡û
>W1711065226
LSBP01000023
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
5959
6032
+
Cys
GCA
[ENA]
¡û
>W131174832
ARIT01000017
Gammaproteobacteria
Halomonas zhanjiangensis DSM 21076 [ARIT]
600857
600784
-
Cys
GCA
[ENA]
¡û
>W1711178266
LWGO01000021
Gammaproteobacteria
Halomonas caseinilytica elongata [LWGO]
21245
21172
-
Cys
GCA
[ENA]
¡û
>W1711261950
LYXG01000043
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
6712
6785
+
Cys
GCA
[ENA]
¡û
>W131221018
AUAB01000018
Gammaproteobacteria
Halomonas anticariensis FP35 = DSM 16096 [AUAB]
89782
89709
-
Cys
GCA
[ENA]
¡û
>W1711688929
MSDP01000019
Gammaproteobacteria
Salinicola sp. MH3R3-1 [MSDP]
37977
37904
-
Cys
GCA
[ENA]
¡û
>W1711750455
MUMZ01000027
Gammaproteobacteria
Halomonas desiderata SP1 [MUMZ]
43722
43649
-
Cys
GCA
[ENA]
¡û
>C171109365
CP020562
Gammaproteobacteria
Halomonas sp. GT [CP020562]
1297645
1297572
-
Cys
GCA
-
¡û
>C171117974
CP021358
Gammaproteobacteria
Kushneria marisflavi SW32 [CP021358]
922479
922552
+
Cys
GCA
-
¡û
>WENV180107146
OAPF01041424
[OAPF] marine metagenome; ENVO:00002010
114
187
+
Cys
GCA
[ENA]
¢þ
>WENV180382880
OBOT01121608
[OBOT] marine metagenome; 0
295
222
-
Cys
GCA
[ENA]
¢þ
>WENV180398845
OBQB01004714
[OBQB] marine metagenome; ENVO.00002150
462
389
-
Cys
GCA
[ENA]
¢þ
>W141252192
CBRE010000102
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
91436
91363
-
Cys
GCA
[ENA]
¡û
>WENV182575855
OJFX01000007
[OJFX] seawater metagenome; Sea water
38884
38811
-
Cys
GCA
[ENA]
¢þ
>WENV182591148
OJIL01000049
[OJIL] seawater metagenome; Sea water
14758
14831
+
Cys
GCA
[ENA]
¢þ
>WENV182591451
OJIO01000087
[OJIO] seawater metagenome; Sea water
54945
55018
+
Cys
GCA
[ENA]
¢þ
>W141279777
JAGO01000010
Gammaproteobacteria
Carnimonas nigrificans ATCC BAA-78 [JAGO]
21647
21574
-
Cys
GCA
[ENA]
¡û
>WENV183717106
PDWJ01000469
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
45103
45030
-
Cys
GCA
[ENA]
¢þ
>WENV170014237
AXCI01002626
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
86
159
+
Cys
GCA
[ENA]
¢þ
>WENV170014260
AXCI01003370
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
10619
10546
-
Cys
GCA
[ENA]
¢þ
>WENV170276197
CERN01010029
[CERN] marine metagenome genome assembly TARA_066_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
12873
12800
-
Cys
GCA
[ENA]
¢þ
>WENV170401743
CEUE01269058
[CEUE] marine metagenome genome assembly TARA_133_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
888
961
+
Cys
GCA
[ENA]
¢þ
>WENV170682417
LFIK01000099
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
23943
24016
+
Cys
GCA
[ENA]
¢þ
>WENV170683308
LFIK01008751
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
7981
7908
-
Cys
GCA
[ENA]
¢þ
>WENV170683434
LFIK01011702
[LFIK] soda lake metagenome; sample T5-Br; brine of Lake Tanatar-5
653
580
-
Cys
GCA
[ENA]
¢þ
>WENV170699904
LGVF01679258
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
1449
1522
+
Cys
GCA
[ENA]
¢þ
>WENV170703272
LKMJ01008780
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
627
554
-
Cys
GCA
[ENA]
¢þ
>WENV170791218
MDSV01079181
[MDSV] marine metagenome; seawater
6530
6603
+
Cys
GCA
[ENA]
¢þ
>WENV170863092
MDTB01086568
[MDTB] marine metagenome; seawater
2445
2518
+
Cys
GCA
[ENA]
¢þ
>WENV170893249
MDTD01049949
[MDTD] marine metagenome; seawater
8084
8011
-
Cys
GCA
[ENA]
¢þ
>WENV170966535
MTEX01012826
[MTEX] soil metagenome; soil biostimulated with molasses as carbon source
261061
260988
-
Cys
GCA
[ENA]
¢þ
>C181088254
CP023656
Gammaproteobacteria
Halomonas hydrothermalis Y2 [CP023656]
2715357
2715284
-
Cys
GCA
-
¡û
>C191165487
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
3741702
3741629
-
Cys
GCA
-
¡û
>W141703431
JMMC01000009
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
271078
271151
+
Cys
GCA
[ENA]
¡û
>W09102544
AAHZ01000009
Gammaproteobacteria
Chromohalobacter salexigens DSM 3043 [AAHZ]
91543
91616
+
Cys
GCA
[ENA]
¡û
>W141754481
JNVS01000079
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
361046
361119
+
Cys
GCA
[ENA]
¡û
>W141802180
JPEU01000001
Gammaproteobacteria
Halomonas sp. SUBG004 [JPEU]
317549
317622
+
Cys
GCA
[ENA]
¡û
>W141818903
JQLV01000002
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
60091
60164
+
Cys
GCA
[ENA]
¡û
>W1910006949
BBQX01000022
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
47865
47938
+
Cys
GCA
[ENA]
¡û
>W1910183858
BJOC01000014
Gammaproteobacteria
Halomonas halmophila NBRC 15537 [BJOC]
33717
33644
-
Cys
GCA
[ENA]
¡û
>W1910184157
BJOI01000041
Gammaproteobacteria
Halomonas meridiana NBRC 15608 [BJOI]
26800
26727
-
Cys
GCA
[ENA]
¡û
>W1911411706
NWUX01000002
Gammaproteobacteria
Halomonas nigrificans MBT G8648 [NWUX]
35477
35404
-
Cys
GCA
[ENA]
¡û
>W1810062682
PDOH01000016
Gammaproteobacteria
Halomonas heilongjiangensis 9·î2Æü [PDOH]
36864
36791
-
Cys
GCA
[ENA]
¡û
>W1810144793
PINZ01000013
Gammaproteobacteria
Halomonas sp. 141 [PINZ]
34498
34425
-
Cys
GCA
[ENA]
¡û
>W1810157231
PJBT01000191
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
164848
164775
-
Cys
GCA
[ENA]
¡û
>W1810364684
PVTK01000013
Gammaproteobacteria
Halomonas songnenensis CGMCC 1.12152 [PVTK]
40349
40422
+
Cys
GCA
[ENA]
¡û
>W1810385471
PXNT01000029
Gammaproteobacteria
Halomonas sp. SYSU XM8 [PXNT]
37016
37089
+
Cys
GCA
[ENA]
¡û
>W1810444111
PZJL01000005
Gammaproteobacteria
Salinicola sp. CR57 [PZJL]
618439
618366
-
Cys
GCA
[ENA]
¡û
>W1810444307
PZJO01000004
Gammaproteobacteria
Salinicola endophyticus CPA92 [PZJO]
399282
399209
-
Cys
GCA
[ENA]
¡û
>W1810444533
PZJS01000002
Gammaproteobacteria
Salinicola socius DSM 19940 [PZJS]
77105
77178
+
Cys
GCA
[ENA]
¡û
>W1810444684
PZJU01000021
Gammaproteobacteria
Salinicola peritrichatus JCM 18795 [PZJU]
22885
22812
-
Cys
GCA
[ENA]
¡û
>C151033766
CP007757
Gammaproteobacteria
Halomonas campaniensis LS21 [CP007757]
2664128
2664055
-
Cys
GCA
[Ensembl]
¡û
>C151104177
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
2024322
2024249
-
Cys
GCA
-
¡û
>W1510071617
CDGR01000162
Gammaproteobacteria
Halomonas salina B6 [CDGR]
4215
4288
+
Cys
GCA
[ENA]
¡û
>W1511270586
JOKD01000021
Gammaproteobacteria
Halomonas salina CIFRI 1 [JOKD]
3818
3891
+
Cys
GCA
[ENA]
¡û
>W1511319651
JPZL01000001
Gammaproteobacteria
Halomonas xinjiangensis TRM 0175 [JPZL]
407076
407149
+
Cys
GCA
[ENA]
¡û
>W1511334731
JQNW01000002
Gammaproteobacteria
Chromohalobacter israelensis 6768 [JQNW]
234350
234277
-
Cys
GCA
[ENA]
¡û
>W1511479213
JWHY01000010
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
141404
141331
-
Cys
GCA
[ENA]
¡û
>W1511518479
JXYB01000082
Gammaproteobacteria
Halomonas sp. S2151 [JXYB]
12728
12801
+
Cys
GCA
[ENA]
¡û
>W1511565203
LAEZ01000019
Gammaproteobacteria
Halomonas sp. HG01 [LAEZ]
59031
58958
-
Cys
GCA
[ENA]
¡û
>W121063521
AJKS02000007
Gammaproteobacteria
Halomonas smyrnensis AAD6 [AJKS]
32613
32686
+
Cys
GCA
[ENA]
¡û
>W1610551203
JYFV01000001
Gammaproteobacteria
Halomonas axialensis [JYFV]
47471
47544
+
Cys
GCA
[ENA]
¡û
>W1610668939
LJZS01000011
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
105806
105733
-
Cys
GCA
[ENA]
¡û
>W1610800058
LOPZ01000013
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
18270
18197
-
Cys
GCA
[ENA]
¡û
>W1610906015
LSBP01000023
Gammaproteobacteria
Halomonadaceae bacterium T82-2 [LSBP]
5959
6032
+
Cys
GCA
[ENA]
¡û
>W1611023873
LYXG01000043
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
6712
6785
+
Cys
GCA
[ENA]
¡û
>W1710516102
FNCI01000003
Gammaproteobacteria
Halomonas taeanensis [FNCI]
468836
468909
+
Cys
GCA
[ENA]
¡û
>W1710541392
FNYH01000005
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
166177
166250
+
Cys
GCA
[ENA]
¡û
>W1710545778
FOBT01000020
Gammaproteobacteria
Halomonas caseinilytica [FOBT]
11303
11376
+
Cys
GCA
[ENA]
¡û
>W1710558507
FOLY01000004
Gammaproteobacteria
Kushneria avicenniae [FOLY]
372653
372726
+
Cys
GCA
[ENA]
¡û
>W1710661476
JYFV01000001
Gammaproteobacteria
Halomonas axialensis [JYFV]
47471
47544
+
Cys
GCA
[ENA]
¡û
>W1710719197
LFGS01000019
Gammaproteobacteria
Halomonas sp. BC1 [LFGS]
783725
783652
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK