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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508151 (124 seq.)
>W1710989104
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1288114
1288184
+
Thr
GGT
[ENA]
¡û
>W1711006305
LQOF01000450
Bacillota
Streptococcus gallolyticus [LQOF]
7742
7812
+
Thr
GGT
[ENA]
¡û
>W1711019337
LQXV01000390
Bacillota
Streptococcus gallolyticus [LQXV]
13719
13649
-
Thr
GGT
[ENA]
¡û
>W1711073845
LSIZ01000032
Bacillota
Streptococcus sp. CCH8-H5 [LSIZ]
241266
241339
+
Thr
GGT
[ENA]
¡û
>W1711109239
LTUM01000052
Bacillota
Streptococcus sp. HMSC078H12 [LTUM]
26658
26731
+
Thr
GGT
[ENA]
¡û
>W1711207036
LXFC01000009
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
1982
2052
+
Thr
GGT
[ENA]
¡û
>W1711210654
LXIK01000172
Bacillota
Streptococcus salivarius [LXIK]
4022
3949
-
Thr
GGT
[ENA]
¡û
>W1711210743
LXIN01000047
Bacillota
Streptococcus salivarius [LXIN]
9786
9713
-
Thr
GGT
[ENA]
¡û
>C171052765
CP016877
Bacillota
Streptococcus thermophilus KLDS 3.1003 [CP016877]
135163
135090
-
Thr
GGT
-
¡û
>C171107334
CP020431
Bacillota
Streptococcus sp. FDAARGOS_192 [CP020431]
1305515
1305442
-
Thr
GGT
-
¡û
>WENV180137434
OATO01025563
[OATO] human gut metagenome; faeces
308
235
-
Thr
GGT
[ENA]
¢þ
>WENV180163802
OAVI01001117
[OAVI] human gut metagenome; faeces
2824
2897
+
Thr
GGT
[ENA]
¢þ
>WENV180182353
OAWO01011624
[OAWO] human gut metagenome; faeces
557
484
-
Thr
GGT
[ENA]
¢þ
>WENV180183783
OAWQ01000902
[OAWQ] human gut metagenome; faeces
1713
1786
+
Thr
GGT
[ENA]
¢þ
>WENV180400586
OBRI01009601
[OBRI] human gut metagenome; ENVO:feces
221
151
-
Thr
GGT
[ENA]
¢þ
>WENV180402024
OBRN01041810
[OBRN] human gut metagenome; ENVO:feces
97
24
-
Thr
GGT
[ENA]
¢þ
>WENV180402101
OBRO01000002
[OBRO] human gut metagenome; ENVO:feces
92060
91987
-
Thr
GGT
[ENA]
¢þ
>WENV180405890
OBUN01000119
[OBUN] human gut metagenome; faeces
35520
35593
+
Thr
GGT
[ENA]
¢þ
>WENV180415603
OBVF01000019
[OBVF] human gut metagenome; faeces
186890
186820
-
Thr
GGT
[ENA]
¢þ
>WENV180442522
OBWX01000078
[OBWX] human gut metagenome; faeces
25037
25110
+
Thr
GGT
[ENA]
¢þ
>WENV180454340
OBXM01025271
[OBXM] human gut metagenome; faeces
25
98
+
Thr
GGT
[ENA]
¢þ
>WENV180462791
OBYB01060829
[OBYB] human gut metagenome; faeces
109
36
-
Thr
GGT
[ENA]
¢þ
>WENV180476312
OBYX01000062
[OBYX] human gut metagenome; faeces
26865
26938
+
Thr
GGT
[ENA]
¢þ
>WENV180598334
OCPM01000286
[OCPM] human gut metagenome; faeces
10805
10732
-
Thr
GGT
[ENA]
¢þ
>WENV180733152
ODGY01036136
[ODGY] human metagenome; G_DNA_Supragingival plaque
150
223
+
Thr
GGT
[ENA]
¢þ
>WENV180741147
ODHG01053075
[ODHG] human metagenome; G_DNA_Buccal mucosa
128
201
+
Thr
GGT
[ENA]
¢þ
>WENV180776399
ODIK01038410
[ODIK] human metagenome; G_DNA_Tongue dorsum
156
229
+
Thr
GGT
[ENA]
¢þ
>WENV180792979
ODIW01005322
[ODIW] human metagenome; G_DNA_Tongue dorsum
82
9
-
Thr
GGT
[ENA]
¢þ
>WENV180815171
ODJP01000049
[ODJP] human metagenome; G_DNA_Tongue dorsum
104977
104904
-
Thr
GGT
[ENA]
¢þ
>WENV180821448
ODJS01010249
[ODJS] human metagenome; G_DNA_Tongue dorsum
1437
1364
-
Thr
GGT
[ENA]
¢þ
>WENV180866100
ODLJ01004531
[ODLJ] human metagenome; G_DNA_Tongue dorsum
111
38
-
Thr
GGT
[ENA]
¢þ
>WENV180874703
ODLQ01004196
[ODLQ] human metagenome; G_DNA_Tongue dorsum
807
880
+
Thr
GGT
[ENA]
¢þ
>WENV180883939
ODMC01025111
[ODMC] human metagenome; G_DNA_Tongue dorsum
1298
1371
+
Thr
GGT
[ENA]
¢þ
>WENV180900745
ODOJ01007502
[ODOJ] human metagenome; G_DNA_Tongue dorsum
297
370
+
Thr
GGT
[ENA]
¢þ
>WENV180952963
ODUI01005036
[ODUI] human metagenome; G_DNA_Tongue dorsum
1882
1955
+
Thr
GGT
[ENA]
¢þ
>WENV180953086
ODUI01008825
[ODUI] human metagenome; G_DNA_Tongue dorsum
942
1015
+
Thr
GGT
[ENA]
¢þ
>WENV180992100
ODVO01043866
[ODVO] human metagenome; G_DNA_Buccal mucosa
81
154
+
Thr
GGT
[ENA]
¢þ
>WENV181060274
ODYM01091978
[ODYM] human metagenome; G_DNA_Tongue dorsum
232
159
-
Thr
GGT
[ENA]
¢þ
>WENV181130871
OEFY01121039
[OEFY] human metagenome; G_DNA_Throat
89
162
+
Thr
GGT
[ENA]
¢þ
>WENV181220545
OFCR01000283
[OFCR] metagenome; Human gut stool
6578
6505
-
Thr
GGT
[ENA]
¢þ
>WENV181338552
OFMF01004448
[OFMF] human gut metagenome; human gut
5854
5784
-
Thr
GGT
[ENA]
¢þ
>WENV181341073
OFMH01007173
[OFMH] human gut metagenome; human gut
1809
1736
-
Thr
GGT
[ENA]
¢þ
>WENV181343996
OFMJ01037307
[OFMJ] human gut metagenome; human gut
167
94
-
Thr
GGT
[ENA]
¢þ
>WENV181366687
OFPS01010981
[OFPS] human gut metagenome; human gut
2596
2523
-
Thr
GGT
[ENA]
¢þ
>WENV181457731
OGEI01009067
[OGEI] metagenome; Human gut stool
1159
1232
+
Thr
GGT
[ENA]
¢þ
>WENV181468375
OGES01002040
[OGES] metagenome; Human gut stool
8659
8586
-
Thr
GGT
[ENA]
¢þ
>WENV181483684
OGFK01016726
[OGFK] metagenome; Human gut stool
1583
1510
-
Thr
GGT
[ENA]
¢þ
>WENV181532599
OGHP01008032
[OGHP] metagenome; Human gut stool
682
755
+
Thr
GGT
[ENA]
¢þ
>WENV181557107
OGIV01002475
[OGIV] metagenome; Human gut stool
2910
2983
+
Thr
GGT
[ENA]
¢þ
>WENV181557883
OGIW01000421
[OGIW] metagenome; Human gut stool
33052
32982
-
Thr
GGT
[ENA]
¢þ
>WENV181564233
OGJH01002636
[OGJH] metagenome; Human gut stool
10753
10826
+
Thr
GGT
[ENA]
¢þ
>WENV181588050
OGKH01000385
[OGKH] metagenome; Human gut stool
12555
12628
+
Thr
GGT
[ENA]
¢þ
>WENV181638875
OGNC01025119
[OGNC] metagenome; Human gut stool
876
803
-
Thr
GGT
[ENA]
¢þ
>WENV181685904
OGOW01002552
[OGOW] human gut metagenome; faeces
14055
14128
+
Thr
GGT
[ENA]
¢þ
>WENV181711855
OGPP01001209
[OGPP] human gut metagenome; faeces
12815
12742
-
Thr
GGT
[ENA]
¢þ
>WENV181774615
OGRE01062887
[OGRE] human gut metagenome; faeces
448
521
+
Thr
GGT
[ENA]
¢þ
>WENV181796121
OGRT01004197
[OGRT] human gut metagenome; faeces
4505
4578
+
Thr
GGT
[ENA]
¢þ
>WENV181814370
OGTG01000060
[OGTG] human gut metagenome; fecal sample 1 from infant 4
92457
92530
+
Thr
GGT
[ENA]
¢þ
>WENV181815500
OGTK01000161
[OGTK] human gut metagenome; fecal sample 2 from infant 2
15563
15636
+
Thr
GGT
[ENA]
¢þ
>WENV181866357
OGWV01004192
[OGWV] human gut metagenome; faeces
1389
1462
+
Thr
GGT
[ENA]
¢þ
>WENV181879663
OGXF01001323
[OGXF] human gut metagenome; faeces
12871
12801
-
Thr
GGT
[ENA]
¢þ
>WENV181892494
OGXP01002250
[OGXP] human gut metagenome; faeces
10378
10451
+
Thr
GGT
[ENA]
¢þ
>WENV181948523
OGZE01006102
[OGZE] human gut metagenome; faeces
1478
1548
+
Thr
GGT
[ENA]
¢þ
>WENV181980807
OHAG01000044
[OHAG] human gut metagenome; faeces
21282
21209
-
Thr
GGT
[ENA]
¢þ
>WENV182037354
OHDD01000395
[OHDD] human gut metagenome; feces
15144
15071
-
Thr
GGT
[ENA]
¢þ
>WENV182149115
OHLG01000067
[OHLG] human gut metagenome; feces
5370
5440
+
Thr
GGT
[ENA]
¢þ
>WENV182230078
OHRK01000060
[OHRK] human gut metagenome; feces
5380
5450
+
Thr
GGT
[ENA]
¢þ
>WENV182314551
OHYA01004569
[OHYA] human gut metagenome; feces
2014
2087
+
Thr
GGT
[ENA]
¢þ
>WENV182331721
OHZJ01000011
[OHZJ] human gut metagenome; feces
119347
119420
+
Thr
GGT
[ENA]
¢þ
>WENV182394706
OIEJ01000412
[OIEJ] human gut metagenome; human gut
10849
10919
+
Thr
GGT
[ENA]
¢þ
>WENV182406263
OIEX01006896
[OIEX] human gut metagenome; fecal sample from infant N3_177 DOL 45
276
206
-
Thr
GGT
[ENA]
¢þ
>WENV182409921
OIFJ01003085
[OIFJ] human gut metagenome; stool
1482
1555
+
Thr
GGT
[ENA]
¢þ
>WENV182412771
OIFW01000108
[OIFW] human gut metagenome; stool
6785
6712
-
Thr
GGT
[ENA]
¢þ
>WENV182530164
OIWV01000942
[OIWV] human gut metagenome; faeces
10108
10035
-
Thr
GGT
[ENA]
¢þ
>WENV182597838
OJJC01000645
[OJJC] metagenome; faeces
93
166
+
Thr
GGT
[ENA]
¢þ
>WENV182824133
OKCB01000038
[OKCB] human gut metagenome; human gut
6608
6681
+
Thr
GGT
[ENA]
¢þ
>WENV182842408
OKIE01000086
[OKIE] human gut metagenome; human gut
5744
5814
+
Thr
GGT
[ENA]
¢þ
>WENV182854670
OKMW01000126
[OKMW] human gut metagenome; human gut
7003
7073
+
Thr
GGT
[ENA]
¢þ
>WENV182872350
OKRV01004473
[OKRV] human gut metagenome; faeces
5180
5107
-
Thr
GGT
[ENA]
¢þ
>WENV182876877
OKRY01001755
[OKRY] human gut metagenome; faeces
2584
2511
-
Thr
GGT
[ENA]
¢þ
>WENV182947438
OKVM01000409
[OKVM] human gut metagenome; human gut
110
183
+
Thr
GGT
[ENA]
¢þ
>WENV182988243
OLAF01001125
[OLAF] human gut metagenome; human gut
4370
4443
+
Thr
GGT
[ENA]
¢þ
>WENV183020619
OLFF01023704
[OLFF] human gut metagenome; human gut
354
281
-
Thr
GGT
[ENA]
¢þ
>WENV183023664
OLFS01002497
[OLFS] human gut metagenome; faeces
1826
1899
+
Thr
GGT
[ENA]
¢þ
>WENV183031536
OLFX01005477
[OLFX] human gut metagenome; faeces
2712
2639
-
Thr
GGT
[ENA]
¢þ
>WENV183031616
OLFX01006971
[OLFX] human gut metagenome; faeces
3598
3671
+
Thr
GGT
[ENA]
¢þ
>WENV183094293
OLNC01001616
[OLNC] human gut metagenome; faeces
7547
7620
+
Thr
GGT
[ENA]
¢þ
>WENV183094423
OLNC01007790
[OLNC] human gut metagenome; faeces
715
788
+
Thr
GGT
[ENA]
¢þ
>WENV183117973
OLNS01001737
[OLNS] human gut metagenome; faeces
2343
2270
-
Thr
GGT
[ENA]
¢þ
>WENV183122027
OLNV01007519
[OLNV] human gut metagenome; faeces
3310
3383
+
Thr
GGT
[ENA]
¢þ
>WENV183209184
OLQB01022325
[OLQB] human gut metagenome; faeces
963
890
-
Thr
GGT
[ENA]
¢þ
>WENV183220036
OLQK01005747
[OLQK] human gut metagenome; faeces
2430
2503
+
Thr
GGT
[ENA]
¢þ
>WENV183228004
OLQQ01011060
[OLQQ] human gut metagenome; faeces
85
15
-
Thr
GGT
[ENA]
¢þ
>WENV183241967
OLRB01001814
[OLRB] human gut metagenome; faeces
2474
2547
+
Thr
GGT
[ENA]
¢þ
>WENV183242972
OLRC01003282
[OLRC] human gut metagenome; faeces
5365
5438
+
Thr
GGT
[ENA]
¢þ
>WENV183256612
OLRL01000027
[OLRL] human gut metagenome; faeces
36156
36083
-
Thr
GGT
[ENA]
¢þ
>WENV183267078
OLRT01041104
[OLRT] human gut metagenome; faeces
722
795
+
Thr
GGT
[ENA]
¢þ
>WENV183300257
OLSO01000165
[OLSO] human gut metagenome; faeces
23298
23371
+
Thr
GGT
[ENA]
¢þ
>WENV183493844
OMGJ01006560
[OMGJ] human gut metagenome; human gut
974
1047
+
Thr
GGT
[ENA]
¢þ
>WENV183503466
OMGU01001667
[OMGU] human gut metagenome; human gut
1484
1411
-
Thr
GGT
[ENA]
¢þ
>WENV183529020
ONZX01037752
[ONZX] human gut metagenome; human gut
301
228
-
Thr
GGT
[ENA]
¢þ
>WENV183753178
PPYE01050386
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1671
1744
+
Thr
GGT
[ENA]
¢þ
>WENV183758764
PPYE01189455
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
543
470
-
Thr
GGT
[ENA]
¢þ
>WENV183763740
PPYE01308629
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
745
818
+
Thr
GGT
[ENA]
¢þ
>C181000228
AP014612
Bacillota
Streptococcus troglodytae TKU 31 [AP014612]
377561
377491
-
Thr
GGT
-
¡û
>C181116558
CP025400
Bacillota
Streptococcus thermophilus EPS [CP025400]
415846
415919
+
Thr
GGT
-
¡û
>C181201733
CP031545
Bacillota
Streptococcus thermophilus ST109 [CP031545]
1335246
1335173
-
Thr
GGT
-
¡û
>W1810069638
PEBN01000009
Bacillota
Streptococcus macedonicus 19AS [PEBN]
27340
27270
-
Thr
GGT
[ENA]
¡û
>W1810109428
PHHG01000001
Bacillota
Streptococcus thermophilus St-10 [PHHG]
149842
149915
+
Thr
GGT
[ENA]
¡û
>W1810586955
QFFS01000001
Bacillota
Streptococcus thermophilus KU30 [QFFS]
139725
139798
+
Thr
GGT
[ENA]
¡û
>W1810907638
QVHX01000002
Bacillota
Streptococcus gallolyticus TM07-4AT [QVHX]
258657
258587
-
Thr
GGT
[ENA]
¡û
>C11121184
AP012054
Bacillota
Streptococcus pasteurianus ATCC 43144 [AP012054]
438046
438116
+
Thr
GGT
[Ensembl]
¡û
>C11122153
CP002340
Bacillota
Streptococcus thermophilus ND03 [CP002340]
1377559
1377486
-
Thr
GGT
[Ensembl]
¡û
>C121018008
HE613569
Bacillota
Streptococcus macedonicus ACA-DC 198 [HE613569]
508640
508710
+
Thr
GGT
[Ensembl]
¡û
>W1610514154
FLZS01000002
Bacillota
Streptococcus macedonicus 679 [FLZS]
393723
393793
+
Thr
GGT
[ENA]
¡û
>W1610843980
LPVQ01000002
Bacillota
Streptococcus gallolyticus [LPVQ]
1288114
1288184
+
Thr
GGT
[ENA]
¡û
>W1610856955
LQOF01000450
Bacillota
Streptococcus gallolyticus [LQOF]
7742
7812
+
Thr
GGT
[ENA]
¡û
>W1610867625
LQXV01000390
Bacillota
Streptococcus gallolyticus [LQXV]
13719
13649
-
Thr
GGT
[ENA]
¡û
>W1610913150
LSIZ01000032
Bacillota
Streptococcus sp. CCH8-H5 [LSIZ]
241266
241339
+
Thr
GGT
[ENA]
¡û
>W1610995066
LXFC01000009
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [LXFC]
1982
2052
+
Thr
GGT
[ENA]
¡û
>W1710520165
FNFJ01000009
Bacillota
Streptococcus gallolyticus [FNFJ]
6002
6072
+
Thr
GGT
[ENA]
¡û
>W1710521637
FNGN01000009
Bacillota
Streptococcus gallolyticus [FNGN]
39591
39521
-
Thr
GGT
[ENA]
¡û
>W1710545456
FOBM01000016
Bacillota
Streptococcus gallolyticus [FOBM]
29515
29445
-
Thr
GGT
[ENA]
¡û
>W1710558541
FOLZ01000001
Bacillota
Streptococcus gallolyticus [FOLZ]
7836
7906
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK