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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508704 (26 seq.)
>W1711386862
MEFV01000030
Betaproteobacteria
Comamonas sp. SCN 67-35 [MEFV]
18163
18238
+
Phe
GAA
[ENA]
¡û
>W1711504559
MKUR01000029
Betaproteobacteria
Burkholderiales bacterium 66-26 [MKUR]
18123
18198
+
Phe
GAA
[ENA]
¡û
>W1711581704
MNUL01000102
Betaproteobacteria
Comamonadaceae bacterium CG1_02_60_18 [MNUL]
2879
2804
-
Phe
GAA
[ENA]
¡û
>W1711584023
MNXY01000087
Betaproteobacteria
Comamonadaceae bacterium CG2_30_60_41 [MNXY]
17698
17773
+
Phe
GAA
[ENA]
¡û
>C026300
CP000542
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [CP000542]
5205376
5205301
-
Phe
GAA
[Ensembl]
¡û
>WENV180256004
OBEQ010775385
[OBEQ] groundwater metagenome; groundwater
299
374
+
Phe
GAA
[ENA]
¢þ
>WENV181144534
OEHO01034264
[OEHO] metagenome; unknown
107
182
+
Phe
GAA
[ENA]
¢þ
>WENV181307964
OFIS01000060
[OFIS] sludge metagenome; sludge
2157
2082
-
Phe
GAA
[ENA]
¢þ
>WENV181311263
OFJB01000502
[OFJB] sludge metagenome; sludge
10999
10924
-
Phe
GAA
[ENA]
¢þ
>WENV181385111
OFRI01034780
[OFRI] wastewater metagenome; Exp Tend VB 90WW
89
14
-
Phe
GAA
[ENA]
¢þ
>WENV181387006
OFRL01031695
[OFRL] wastewater metagenome; Lake Maggiore Cannobio
733
808
+
Phe
GAA
[ENA]
¢þ
>WENV181401450
OFTX01000221
[OFTX] sludge metagenome; sludge
10428
10353
-
Phe
GAA
[ENA]
¢þ
>WENV181401812
OFTX01008267
[OFTX] sludge metagenome; sludge
1745
1670
-
Phe
GAA
[ENA]
¢þ
>WENV181402338
OFTY01000698
[OFTY] sludge metagenome; sludge
2157
2082
-
Phe
GAA
[ENA]
¢þ
>WENV170557168
CXWL01020474
[CXWL] groundwater metagenome; biofilm material
4009
3934
-
Phe
GAA
[ENA]
¢þ
>WENV170639731
JFJP01006384
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
8691
8766
+
Phe
GAA
[ENA]
¢þ
>WENV170639746
JFJP01006754
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10198
10273
+
Phe
GAA
[ENA]
¢þ
>WENV170639798
JFJP01008141
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
85
10
-
Phe
GAA
[ENA]
¢þ
>WENV170639846
JFJP01009849
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
757
682
-
Phe
GAA
[ENA]
¢þ
>WENV170961826
MLJW01002048
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2850
2925
+
Phe
GAA
[ENA]
¢þ
>W09106044
AASQ01000012
Betaproteobacteria
Verminephrobacter eiseniae EF01-2 [AASQ]
182083
182008
-
Phe
GAA
[ENA]
¡û
>C141003914
CP004885
Betaproteobacteria
Candidatus Symbiobacter mobilis CR [CP004885]
493673
493598
-
Phe
GAA
[Ensembl]
¡û
>W11155850
AFAL01000425
Betaproteobacteria
Verminephrobacter aporrectodeae At4 [AFAL]
2057
1982
-
Phe
GAA
[ENA]
¡û
>C131007221
CP003803
Betaproteobacteria
Candidatus Kinetoplastibacterium desouzaii TCC079E [CP003803]
71398
71323
-
Phe
GAA
[Ensembl]
¡û
>C131007264
CP003804
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii TCC036E [CP003804]
71495
71420
-
Phe
GAA
[Ensembl]
¡û
>C131010819
CP003978
Betaproteobacteria
Candidatus Kinetoplastibacterium crithidii [ex Angomonas deanei [CP003978]
704327
704252
-
Phe
GAA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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