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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.508860 (24 seq.)
>W1711634488
MPUA01000269
Gammaproteobacteria
Escherichia coli [MPUA]
269
194
-
Glu
TTC
[ENA]
¡û
>C171063909
CP017581
Gammaproteobacteria
Pantoea stewartii subsp. stewartii DC283 [CP017581]
65680
65605
-
Glu
TTC
-
¡û
>WENV181172456
OEIV010713908
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
128
203
+
Glu
TTC
[ENA]
¢þ
>WENV181834923
OGVH01000070
[OGVH] freshwater metagenome; freshwater
4982
4907
-
Glu
TTC
[ENA]
¢þ
>WENV181841323
OGVR01008427
[OGVR] freshwater metagenome; freshwater
613
688
+
Glu
TTC
[ENA]
¢þ
>W141215784
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1975745
1975820
+
Glu
TTC
[ENA]
¡û
>W141215792
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
2661139
2661214
+
Glu
TTC
[ENA]
¡û
>W141215812
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1520866
1520791
-
Glu
TTC
[ENA]
¡û
>W141215820
AZUK01000001
Gammaproteobacteria
Tolumonas lignilytica BRL6-1 [AZUK]
1196942
1196867
-
Glu
TTC
[ENA]
¡û
>W09122216
ACFZ01000017
Gammaproteobacteria
Tolumonas auensis DSM 9187 [ACFZ]
906
831
-
Glu
TTC
[ENA]
¡û
>C09109542
CP000857
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 [CP000857]
4076335
4076410
+
Glu
TTC
[Ensembl]
¡û
>C09109549
CP000857
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Paratyphi C str. RKS4594 [CP000857]
4171279
4171354
+
Glu
TTC
[Ensembl]
¡û
>C09110499
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
207055
207130
+
Glu
TTC
[Ensembl]
¡û
>C09110500
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
367070
367145
+
Glu
TTC
[Ensembl]
¡û
>C09110504
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
911795
911870
+
Glu
TTC
[Ensembl]
¡û
>C09110530
CP001616
Gammaproteobacteria
Tolumonas auensis DSM 9187 [CP001616]
3255080
3255005
-
Glu
TTC
[Ensembl]
¡û
>W1911573791
PDEG01000003
Gammaproteobacteria
Pantoea agglomerans FDAARGOS_407 [PDEG]
2133083
2133008
-
Glu
TTC
[ENA]
¡û
>C151081476
CP011365
Gammaproteobacteria
Salmonella enterica subsp. enterica serovar Typhimurium FORC_015 [CP011365]
4286952
4287027
+
Glu
TTC
[Ensembl]
¡û
>WENV11100135
ADWX01222576
Ant fungus garden metagenome, Atta colombica fungus garden
617
692
+
Glu
TTC
[ENA]
¡û
>W1511357469
JRWI01000053
Gammaproteobacteria
Pantoea stewartii M009 [JRWI]
296
221
-
Glu
TTC
[ENA]
¡û
>W1610629027
LIHC01000012
Gammaproteobacteria
Pantoea stewartii [LIHC]
791070
790995
-
Glu
TTC
[ENA]
¡û
>W1610630848
LIIU01000024
Gammaproteobacteria
Pantoea stewartii [LIIU]
364
289
-
Glu
TTC
[ENA]
¡û
>W1710760160
LIHC01000012
Gammaproteobacteria
Pantoea stewartii [LIHC]
791070
790995
-
Glu
TTC
[ENA]
¡û
>W1710762187
LIIU01000024
Gammaproteobacteria
Pantoea stewartii [LIIU]
364
289
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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