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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509147 (111 seq.)
>W1710934828
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343448
5343519
+
Cys
GCA
[ENA]
¡û
>W131165204
ARBJ01000051
Actinomycetota
Actinoplanes globisporus DSM 43857 [ARBJ]
26695
26766
+
Cys
GCA
[ENA]
¡û
>W131170492
ARFO01000014
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
8996
9069
+
Cys
GCA
[ENA]
¡û
>W131170498
ARFO01000018
Actinomycetota
Actinomadura flavalba DSM 45200 [ARFO]
99617
99690
+
Cys
GCA
[ENA]
¡û
>W131172363
ARGW01000060
Actinomycetota
Micromonospora sp. CNB394 [ARGW]
3767
3696
-
Cys
GCA
[ENA]
¡û
>W131179838
ARMS01000024
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
47531
47604
+
Cys
GCA
[ENA]
¡û
>W131179871
ARMS01000041
Actinomycetota
Actinomadura atramentaria DSM 43919 [ARMS]
147733
147806
+
Cys
GCA
[ENA]
¡û
>W131227551
AUFG01000004
Actinomycetota
Arsenicicoccus bolidensis DSM 15745 [AUFG]
165304
165375
+
Cys
GCA
[ENA]
¡û
>W1711573767
MNDX01000022
Actinomycetota
Actinobacteria bacterium 13_2_20CM_2_71_6 [MNDX]
21489
21560
+
Cys
GCA
[ENA]
¡û
>W1711658102
MQMK01000140
Actinomycetota
Micromonospora sp. Rc5 [MQMK]
233
304
+
Cys
GCA
[ENA]
¡û
>W1711937150
NAPR01000002
Actinomycetota
Micromonospora sp. NBS 11-29 NBS 11/29 [NAPR]
223261
223332
+
Cys
GCA
[ENA]
¡û
>C171109510
CP020567
Actinomycetota
Kitasatospora aureofaciens DM-1 [CP020567]
4848524
4848451
-
Cys
GCA
-
¡û
>C171131325
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7711679
7711608
-
Cys
GCA
-
¡û
>C171131328
LT827010
Actinomycetota
Actinoplanes sp. SE50/110 [LT827010]
7672128
7672057
-
Cys
GCA
-
¡û
>WENV180034873
FTKS01000182
[FTKS] metagenome; soil
3196
3123
-
Cys
GCA
[ENA]
¢þ
>WENV180034932
FTKS01082320
[FTKS] metagenome; soil
36
107
+
Cys
GCA
[ENA]
¢þ
>WENV180250945
OBEQ010327251
[OBEQ] groundwater metagenome; groundwater
2238
2167
-
Cys
GCA
[ENA]
¢þ
>WENV180311676
OBJT01463978
[OBJT] soil metagenome; soil
129
200
+
Cys
GCA
[ENA]
¢þ
>WENV181163986
OEIQ01400081
[OEIQ] soil metagenome; soil
155
84
-
Cys
GCA
[ENA]
¢þ
>W141201013
AZAN01000002
Actinomycetota
Actinospica robiniae DSM 44927 [AZAN]
9279794
9279723
-
Cys
GCA
[ENA]
¡û
>W141275774
JADG01000010
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
225149
225076
-
Cys
GCA
[ENA]
¡û
>W141275794
JADG01000017
Actinomycetota
Actinomadura oligospora ATCC 43269 [JADG]
120664
120735
+
Cys
GCA
[ENA]
¡û
>W141282777
JAIZ01000517
Actinomycetota
Kitasatospora sp. MBT63 [JAIZ]
67393
67466
+
Cys
GCA
[ENA]
¡û
>WENV183664283
ORJL010361992
[ORJL] groundwater metagenome; groundwater
2032
2105
+
Cys
GCA
[ENA]
¢þ
>WENV183675183
ORJL011482904
[ORJL] groundwater metagenome; groundwater
887
960
+
Cys
GCA
[ENA]
¢þ
>WENV183692447
ORMF011918928
[ORMF] groundwater metagenome; groundwater
259
330
+
Cys
GCA
[ENA]
¢þ
>WENV170961829
MLJW01002082
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
1561
1488
-
Cys
GCA
[ENA]
¢þ
>C181074283
CP022961
Actinomycetota
Plantactinospora sp. KBS50 [CP022961]
1896641
1896712
+
Cys
GCA
-
¡û
>C181078609
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7710863
7710792
-
Cys
GCA
-
¡û
>C181078612
CP023298
Actinomycetota
Actinoplanes sp. SE50 [CP023298]
7671312
7671241
-
Cys
GCA
-
¡û
>W09110051
ABUU01000087
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
30000
30071
+
Cys
GCA
[ENA]
¡û
>W09110061
ABUU01000140
Actinomycetota
Streptosporangium roseum DSM 43021 [ABUU]
24052
24123
+
Cys
GCA
[ENA]
¡û
>W141755628
JNWR01000016
Actinomycetota
Kitasatospora aureofaciens [JNWR]
3154
3081
-
Cys
GCA
[ENA]
¡û
>W141758314
JNYN01001277
Actinomycetota
Actinoplanes liguriensis [JNYN]
5
76
+
Cys
GCA
[ENA]
¡û
>W141758672
JNYT01001835
Actinomycetota
Ampullariella violaceochromogenes [JNYT]
173
102
-
Cys
GCA
[ENA]
¡û
>W141759675
JNZN01000273
Actinomycetota
Streptomyces pyridomyceticus [JNZN]
71
144
+
Cys
GCA
[ENA]
¡û
>W141761757
JOAY01000008
Actinomycetota
Streptomyces pyridomyceticus [JOAY]
14861
14934
+
Cys
GCA
[ENA]
¡û
>W141765015
JODB01006721
Actinomycetota
Streptomyces sp. NRRL S-426 [JODB]
108
35
-
Cys
GCA
[ENA]
¡û
>W141767475
JOEQ01000026
Actinomycetota
Streptosporangium amethystogenes [JOEQ]
21702
21631
-
Cys
GCA
[ENA]
¡û
>W141770042
JOGF01001441
Actinomycetota
Streptomyces sp. NRRL S-984 [JOGF]
108
35
-
Cys
GCA
[ENA]
¡û
>W141770167
JOGH01000015
Actinomycetota
Kitasatospora sp. NRRL B-11411 [JOGH]
2319
2246
-
Cys
GCA
[ENA]
¡û
>W141774356
JOJA01000005
Actinomycetota
Streptomyces sp. NRRL S-384 [JOJA]
37772
37699
-
Cys
GCA
[ENA]
¡û
>W141818474
JQLN01000004
Actinomycetota
Kitasatospora mediocidica KCTC 9733 [JQLN]
692308
692381
+
Cys
GCA
[ENA]
¡û
>W141819941
JQMO01000002
Actinomycetota
Kitasatospora azatica KCTC 9699 [JQMO]
1310865
1310938
+
Cys
GCA
[ENA]
¡û
>W1910547310
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
253176
253105
-
Cys
GCA
[ENA]
¡û
>W1910547313
FZNR01000001
Actinomycetota
Actinoplanes regularis DSM 43151 [FZNR]
196865
196794
-
Cys
GCA
[ENA]
¡û
>W1910548666
FZOR01000024
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
27910
27981
+
Cys
GCA
[ENA]
¡û
>W1910548669
FZOR01000024
Actinomycetota
Actinomadura meyerae DSM 44715 [FZOR]
86704
86775
+
Cys
GCA
[ENA]
¡û
>W1910803673
MTBP01000003
Actinomycetota
Actinomadura rubteroloni 5·î2Æü [MTBP]
586218
586289
+
Cys
GCA
[ENA]
¡û
>W1910811038
MUYZ01000146
Actinomycetota
Micromonospora sp. MH33 [MUYZ]
8888
8959
+
Cys
GCA
[ENA]
¡û
>W1911494823
OBMJ01000001
Actinomycetota
Streptomyces sp. 1331.2 [OBMJ]
6081968
6081895
-
Cys
GCA
[ENA]
¡û
>W1911678955
QHJN01000046
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
49547
49618
+
Cys
GCA
[ENA]
¡û
>W1911678979
QHJN01000112
Actinomycetota
Actinomadura sp. WAC 06369 [QHJN]
15137
15066
-
Cys
GCA
[ENA]
¡û
>W1810057238
PDHU01000001
Actinomycetota
Micromonospora sp. WMMA1996 [PDHU]
3751059
3750988
-
Cys
GCA
[ENA]
¡û
>W1810072984
PEFQ01000001
Actinomycetota
Streptomyces sp. 1 [PEFQ]
1460578
1460651
+
Cys
GCA
[ENA]
¡û
>W1810172757
PJMP01000001
Actinomycetota
Plantactinospora sp. CNZ320 [PJMP]
7482219
7482290
+
Cys
GCA
[ENA]
¡û
>W1810173024
PJMT01000001
Actinomycetota
Streptomyces sp. GP55 [PJMT]
7515845
7515772
-
Cys
GCA
[ENA]
¡û
>W1810357010
PVNI01000027
Actinomycetota
Actinomadura viridilutea DSM 44433 [PVNI]
37410
37481
+
Cys
GCA
[ENA]
¡û
>W1810368165
PVZG01000016
Actinomycetota
Pseudosporangium ferrugineum DSM 45348 [PVZG]
175494
175565
+
Cys
GCA
[ENA]
¡û
>W1810368708
PVZV01000003
Actinomycetota
Actinocorallia populi A251 [PVZV]
372849
372920
+
Cys
GCA
[ENA]
¡û
>W1810368711
PVZV01000003
Actinomycetota
Actinocorallia populi A251 [PVZV]
395057
395130
+
Cys
GCA
[ENA]
¡û
>W1810418054
PYPS01000027
Actinomycetota
Micromonospora sp. RP3T [PYPS]
81098
81027
-
Cys
GCA
[ENA]
¡û
>W1810596599
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
701187
701116
-
Cys
GCA
[ENA]
¡û
>W1810596602
QGGR01000002
Actinomycetota
Actinoplanes xinjiangensis DSM 45184 [QGGR]
686631
686560
-
Cys
GCA
[ENA]
¡û
>W1810603194
QGKS01000350
Actinomycetota
Micromonospora sp. 4G51 [QGKS]
9118
9189
+
Cys
GCA
[ENA]
¡û
>W1810608090
QGSV01000219
Actinomycetota
Micromonospora globispora S2904 [QGSV]
11182
11253
+
Cys
GCA
[ENA]
¡û
>W1810684547
QKYN01000086
Actinomycetota
Streptacidiphilus pinicola MMS16-CNU450 [QKYN]
68415
68488
+
Cys
GCA
[ENA]
¡û
>W1810694908
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
13216
13287
+
Cys
GCA
[ENA]
¡û
>W1810694911
QLMJ01000005
Actinomycetota
Actinoplanes lutulentus CGMCC 4.7090 [QLMJ]
22900
22971
+
Cys
GCA
[ENA]
¡û
>W1810701649
QMEZ01000004
Actinomycetota
Micromonospora sp. LHW51205 [QMEZ]
707490
707419
-
Cys
GCA
[ENA]
¡û
>W1810861791
QTUC01000001
Actinomycetota
Thermasporomyces composti DSM 22891 [QTUC]
4188511
4188440
-
Cys
GCA
[ENA]
¡û
>W1810888878
QURH01000180
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
52635
52562
-
Cys
GCA
[ENA]
¡û
>W1810888900
QURH01000336
Actinomycetota
Actinomadura logoneensis NEAU-G17 [QURH]
10727
10798
+
Cys
GCA
[ENA]
¡û
>W1810906054
QVFT01000018
Actinomycetota
Micromonospora endophytica 202201 [QVFT]
6034
5963
-
Cys
GCA
[ENA]
¡û
>W1810907929
QVIG01000001
Actinomycetota
Kitasatospora xanthocidica MMS17-GH009 [QVIG]
3160296
3160369
+
Cys
GCA
[ENA]
¡û
>C151090456
CP012070
Actinomycetota
Arsenicicoccus sp. oral taxon 190 F0371 [CP012070]
2523143
2523214
+
Cys
GCA
-
¡û
>W1510014249
BBPP01000062
Actinomycetota
Streptacidiphilus melanogenes NBRC 103184 [BBPP]
2472
2399
-
Cys
GCA
[ENA]
¡û
>W1510014274
BBPQ01000008
Actinomycetota
Streptacidiphilus anmyonensis NBRC 103185 [BBPQ]
34658
34731
+
Cys
GCA
[ENA]
¡û
>W1511311636
JPRF01000183
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
178
105
-
Cys
GCA
[ENA]
¡û
>W1511311699
JPRF01000527
Actinomycetota
Kitasatospora aureofaciens ATCC 10762 [JPRF]
2072
1999
-
Cys
GCA
[ENA]
¡û
>C121001060
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7298017
7297946
-
Cys
GCA
[Ensembl]
¡û
>C121001063
AP012319
Actinomycetota
Actinoplanes missouriensis 431 [AP012319]
7287582
7287511
-
Cys
GCA
[Ensembl]
¡û
>W121124435
BAFE01000089
Actinomycetota
Mobilicoccus pelagius NBRC 104925 [BAFE]
2575
2504
-
Cys
GCA
[ENA]
¡û
>W1610052523
BBHY01001892
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
321
250
-
Cys
GCA
[ENA]
¡û
>W1610067534
BCQQ01000111
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
23905
23978
+
Cys
GCA
[ENA]
¡û
>W1610067546
BCQQ01000167
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
85
14
-
Cys
GCA
[ENA]
¡û
>W1610067737
BCQT01000026
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
71962
72035
+
Cys
GCA
[ENA]
¡û
>W1610068228
BCRE01000003
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
21626
21699
+
Cys
GCA
[ENA]
¡û
>W1610068231
BCRE01000004
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
3278
3351
+
Cys
GCA
[ENA]
¡û
>W1610506909
FLRH01000004
Actinomycetota
Micromonospora sediminicola [FLRH]
687094
687023
-
Cys
GCA
[ENA]
¡û
>W1610551431
JYIK01000387
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
740
811
+
Cys
GCA
[ENA]
¡û
>W1610792316
LOJP01000001
Actinomycetota
Actinoplanes sp. TFC3 [LOJP]
5343448
5343519
+
Cys
GCA
[ENA]
¡û
>W1710048901
BBHY01001892
Actinomycetota
Catenuloplanes niger JCM 9533 [BBHY]
321
250
-
Cys
GCA
[ENA]
¡û
>W1710064907
BCQQ01000111
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
23905
23978
+
Cys
GCA
[ENA]
¡û
>W1710064919
BCQQ01000167
Actinomycetota
Actinomadura formosensis NBRC 14204 [BCQQ]
85
14
-
Cys
GCA
[ENA]
¡û
>W1710065110
BCQT01000026
Actinomycetota
Actinomadura macra NBRC 14102 [BCQT]
71962
72035
+
Cys
GCA
[ENA]
¡û
>W1710065601
BCRE01000003
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
21626
21699
+
Cys
GCA
[ENA]
¡û
>W1710065604
BCRE01000004
Actinomycetota
Kribbia dieselivorans NBRC 106261 [BCRE]
3278
3351
+
Cys
GCA
[ENA]
¡û
>W1710499127
FLRH01000004
Actinomycetota
Micromonospora sediminicola [FLRH]
687094
687023
-
Cys
GCA
[ENA]
¡û
>W1710502899
FMCT01000024
Actinomycetota
Micromonospora carbonacea [FMCT]
11007
11078
+
Cys
GCA
[ENA]
¡û
>W1710503571
FMDM01000012
Actinomycetota
Micromonospora humi [FMDM]
14263
14334
+
Cys
GCA
[ENA]
¡û
>W1710504188
FMHU01000002
Actinomycetota
Micromonospora inyonensis [FMHU]
3320326
3320255
-
Cys
GCA
[ENA]
¡û
>W1710504507
FMIA01000002
Actinomycetota
Micromonospora yangpuensis [FMIA]
2195683
2195754
+
Cys
GCA
[ENA]
¡û
>W1710531053
FNPH01000002
Actinomycetota
Micromonospora pattaloongensis [FNPH]
353969
353898
-
Cys
GCA
[ENA]
¡û
>W1710539647
FNVO01000046
Actinomycetota
Thermomonospora echinospora [FNVO]
249
178
-
Cys
GCA
[ENA]
¡û
>W1710539652
FNVO01000052
Actinomycetota
Thermomonospora echinospora [FNVO]
74
145
+
Cys
GCA
[ENA]
¡û
>W1710565035
FOQY01000005
Actinomycetota
Streptosporangium canum [FOQY]
332268
332197
-
Cys
GCA
[ENA]
¡û
>W1710565038
FOQY01000005
Actinomycetota
Streptosporangium canum [FOQY]
288190
288119
-
Cys
GCA
[ENA]
¡û
>W1710565041
FOQY01000005
Actinomycetota
Streptosporangium canum [FOQY]
201966
201895
-
Cys
GCA
[ENA]
¡û
>W1710661704
JYIK01000387
Actinomycetota
Carbonactinospora thermoautotrophica thermoautotrophicus [JYIK]
740
811
+
Cys
GCA
[ENA]
¡û
>W1710765838
LIPD01000004
Actinomycetota
Streptomyces sp. CB02056 [LIPD]
352346
352273
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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