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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.509479 (12 seq.)
>W1711421646
MHZH01000189
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
5959
5884
-
Thr
CGT
[ENA]
¡û
>w002044
AAAU03000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
845707
845782
+
Thr
CGT
[ENA]
¡û
>WENV170003575
AGTN01381895
[AGTN] bioreactor metagenome; poplar biomass
579
504
-
Thr
CGT
[ENA]
¢þ
>C181011077
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
1505415
1505490
+
Thr
CGT
-
¡û
>W09102082
AAHH01000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
845707
845782
+
Thr
CGT
[ENA]
¡û
>C09100879
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
1678761
1678836
+
Thr
CGT
[Ensembl]
¡û
>C151068449
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
2938350
2938275
-
Thr
CGT
[Ensembl]
¡û
>W1610070308
BCTD01000076
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
3069
3144
+
Thr
CGT
[ENA]
¡û
>C131014888
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
1678788
1678863
+
Thr
CGT
[Ensembl]
¡û
>C131014952
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
1678774
1678849
+
Thr
CGT
[Ensembl]
¡û
>W1710067681
BCTD01000076
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
3069
3144
+
Thr
CGT
[ENA]
¡û
>W1710581994
FPKM01000034
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
3556
3631
+
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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