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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50970 (44 seq.)
>A171000218
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
962047
961960
-
Leu
GAG
-
¡û
>A171000680
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
333130
333217
+
Leu
TAG
-
¡û
>A171000698
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
1158918
1159005
+
Leu
GAG
-
¡û
>A171000719
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
220299
220212
-
Leu
CAG
-
¡û
>A171001889
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1051060
1050973
-
Leu
GAG
-
¡û
>A171002180
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
1756200
1756113
-
Leu
GAG
-
¡û
>A171002294
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
587130
587217
+
Leu
GAG
-
¡û
>A171002656
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1104972
1105059
+
Leu
GAG
-
¡û
>A171003266
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
972645
972732
+
Leu
GAG
-
¡û
>A171003323
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1541825
1541738
-
Leu
GAG
-
¡û
>A171003378
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
677554
677467
-
Leu
GAG
-
¡û
>A171003775
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
949645
949732
+
Leu
GAG
-
¡û
>A171004205
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
346561
346648
+
Leu
GAG
-
¡û
>A171004298
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
805860
805773
-
Leu
GAG
-
¡û
>A171004459
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
1901725
1901638
-
Leu
GAG
-
¡û
>A171005871
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
957777
957864
+
Leu
GAG
-
¡û
>A171006489
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1195318
1195231
-
Leu
GAG
-
¡û
>A171006679
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
130247
130160
-
Leu
GAG
-
¡û
>A171007102
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1068841
1068928
+
Leu
GAG
-
¡û
>A171007495
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
677043
677130
+
Leu
GAG
-
¡û
>WENV180287252
OBIK01005467
[OBIK] hydrothermal vent metagenome; sea water
310
394
+
Leu
TAG
[ENA]
¢þ
>WENV180287254
OBIK01005928
[OBIK] hydrothermal vent metagenome; sea water
405
489
+
Leu
CAG
[ENA]
¢þ
>WENV180648155
OCSI01105336
[OCSI] metagenome; diffuse fluid
84
168
+
Leu
TAG
[ENA]
¢þ
>WENV181214806
OFBY01017111
[OFBY] metagenome; hydrothermal vent
96
181
+
Leu
GAG
[ENA]
¢þ
>At1811
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
955199
955112
-
Leu
GAG
[Ensembl]
¡û
>At1853
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
875456
875369
-
Leu
GAG
[Ensembl]
¡û
>At1900
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1163638
1163551
-
Leu
GAG
[Ensembl]
¡û
>WENV170675980
LDZQ01001581
[LDZQ] terrestrial metagenome; oil reservoir sample I2
9889
9802
-
Leu
GAG
[ENA]
¢þ
>WENV170676295
LDZR01002225
[LDZR] terrestrial metagenome; oil reservoir sample K2
37677
37590
-
Leu
TAG
[ENA]
¢þ
>WENV170676322
LDZR01002267
[LDZR] terrestrial metagenome; oil reservoir sample K2
9886
9799
-
Leu
GAG
[ENA]
¢þ
>W1910200303
FJMQ01000005
Euryarchaeota
Thermococcus litoralis [FJMQ]
6364
6451
+
Leu
GAG
[ENA]
¡û
>W1910229971
FOIW01000001
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
220416
220329
-
Leu
GAG
[ENA]
¡û
>W1910597292
LANF01000018
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
2418
2505
+
Leu
GAG
[ENA]
¡û
>W1610000732
ABSF01000013
Euryarchaeota
Thermococcus barophilus MP [ABSF]
327098
327185
+
Leu
GAG
[ENA]
¡û
>W1610000899
ABXN01000014
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
346520
346433
-
Leu
GAG
[ENA]
¡û
>W1610004905
AHVB01000008
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
101
188
+
Leu
GAG
[ENA]
¡û
>W1610004945
AHVB01000072
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
33032
32945
-
Leu
GAG
[ENA]
¡û
>W1610005268
AJLF01000001
Euryarchaeota
Thermococcus zilligii AN1 [AJLF]
108315
108402
+
Leu
GAG
[ENA]
¡û
>W1610005602
AKID01000130
Euryarchaeota
Thermococcus sp. PK [AKID]
53685
53598
-
Leu
GAG
[ENA]
¡û
>W1610548866
JXCG01000003
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
20217
20130
-
Leu
GAG
[ENA]
¡û
>W1610612442
LGET01000040
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
9889
9802
-
Leu
GAG
[ENA]
¡û
>W1610612800
LGFD01000004
Euryarchaeota
Thermococcus sibiricus [LGFD]
37677
37590
-
Leu
TAG
[ENA]
¡û
>W1610612827
LGFD01000046
Euryarchaeota
Thermococcus sibiricus [LGFD]
9886
9799
-
Leu
GAG
[ENA]
¡û
>W1610613056
LGFJ01000078
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
1274
1187
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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