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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510437 (29 seq.)
>W1711766813
MUYW01000002
Alphaproteobacteria
Bartonella taylorii [MUYW]
27307
27232
-
Trp
CCA
[ENA]
¡û
>C171099679
CP019780
Alphaproteobacteria
Bartonella sp. A1379B [CP019780]
432591
432666
+
Trp
CCA
-
¡û
>C171099761
CP019786
Alphaproteobacteria
Bartonella sp. Raccoon60 [CP019786]
487556
487631
+
Trp
CCA
-
¡û
>W141006839
AGWD01000010
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii str. Tweed [AGWD]
244229
244304
+
Trp
CCA
[ENA]
¡û
>W141010017
AHPK01000002
Alphaproteobacteria
Bartonella rochalimae ATCC BAA-1498 [AHPK]
271257
271182
-
Trp
CCA
[ENA]
¡û
>W141245839
CALU01000002
Alphaproteobacteria
Bartonella florencae R4(2010) [CALU]
42
117
+
Trp
CCA
[ENA]
¡û
>W141245875
CALV01000002
Alphaproteobacteria
Bartonella senegalensis OS02 [CALV]
64300
64225
-
Trp
CCA
[ENA]
¡û
>W141245940
CALW02000063
Alphaproteobacteria
Bartonella rattaustraliani AUST/NH4 [CALW]
43173
43098
-
Trp
CCA
[ENA]
¡û
>W141245981
CALX01000440
Alphaproteobacteria
Bartonella queenslandensis AUST/NH15 [CALX]
53
128
+
Trp
CCA
[ENA]
¡û
>C08002159
AM260525
Alphaproteobacteria
Bartonella tribocorum CIP 105476 type strain:506 [AM260525]
950644
950719
+
Trp
CCA
[Ensembl]
¡û
>W141275397
JACX01000006
Alphaproteobacteria
Bartonella grahamii ATCC 700132 [JACX]
130851
130776
-
Trp
CCA
[ENA]
¡û
>W141275459
JACY01000022
Alphaproteobacteria
Bartonella vinsonii subsp. berkhoffii ATCC 51672 [JACY]
12932
12857
-
Trp
CCA
[ENA]
¡û
>W141275565
JADB01000003
Alphaproteobacteria
Bartonella elizabethae ATCC 49927 [JADB]
278730
278655
-
Trp
CCA
[ENA]
¡û
>W141275613
JADC01000010
Alphaproteobacteria
Bartonella clarridgeiae ATCC 51734 [JADC]
285729
285654
-
Trp
CCA
[ENA]
¡û
>WENV170008172
AMZC01003537
[AMZC] bioreactor sludge metagenome; anaerobic thermophilic cellulolytic sludge from lab reactor
4001
3926
-
Trp
CCA
[ENA]
¢þ
>C181037912
CP019489
Alphaproteobacteria
Bartonella sp. 1-1C [CP019489]
495486
495560
+
Trp
CCA
-
¡û
>C191214168
LR134527
Alphaproteobacteria
Bartonella elizabethae NCTC12898 [LR134527]
962798
962723
-
Trp
CCA
-
¡û
>W1910942143
NJGE01000012
Alphaproteobacteria
Bartonella tribocorum L103 [NJGE]
61845
61770
-
Trp
CCA
[ENA]
¡û
>W1910954259
NJPP01000014
Alphaproteobacteria
Bartonella tribocorum C635 [NJPP]
44049
43974
-
Trp
CCA
[ENA]
¡û
>C09102289
CP001562
Alphaproteobacteria
Bartonella grahamii as4aup [CP001562]
830019
830094
+
Trp
CCA
[Ensembl]
¡û
>C151102045
HG969192
Alphaproteobacteria
Bartonella tribocorum BM1374166 [HG969192]
951663
951738
+
Trp
CCA
[Ensembl]
¡û
>C11102687
FN645454
Alphaproteobacteria
Bartonella clarridgeiae 73 [FN645454]
1001295
1001220
-
Trp
CCA
[Ensembl]
¡û
>W121059050
AILT01000004
Alphaproteobacteria
Bartonella sp. DB5-6 [AILT]
64072
63997
-
Trp
CCA
[ENA]
¡û
>W121059098
AILU01000003
Alphaproteobacteria
Bartonella washoeensis Sb944nv [AILU]
443575
443650
+
Trp
CCA
[ENA]
¡û
>W121059196
AILW01000003
Alphaproteobacteria
Bartonella elizabethae Re6043vi [AILW]
113664
113589
-
Trp
CCA
[ENA]
¡û
>W121059483
AIMD01000035
Alphaproteobacteria
Bartonella taylorii 8TBB [AIMD]
179399
179324
-
Trp
CCA
[ENA]
¡û
>W121059526
AIME01000004
Alphaproteobacteria
Bartonella alsatica IBS 382 [AIME]
126879
126804
-
Trp
CCA
[ENA]
¡û
>W121059551
AIMF01000013
Alphaproteobacteria
Bartonella elizabethae F9251 [AIMF]
35088
35163
+
Trp
CCA
[ENA]
¡û
>W1710721080
LFMF01000002
Alphaproteobacteria
Bartonella elizabethae [LFMF]
89
164
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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