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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510653 (23 seq.)
>C016504
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
93088
93163
+
Glu
TTC
[Ensembl]
¡û
>C016521
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1035169
1035244
+
Glu
TTC
[Ensembl]
¡û
>C016533
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
1194430
1194505
+
Glu
TTC
[Ensembl]
¡û
>C016558
CP000510
Gammaproteobacteria
Psychromonas ingrahamii 37 [CP000510]
3948233
3948158
-
Glu
TTC
[Ensembl]
¡û
>w015567
AAPG01000146
Gammaproteobacteria
Psychromonas sp. CNPT3 [AAPG]
1251
1179
-
Glu
TTC
[ENA]
¡û
>WENV180042637
LQAF01016284
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
46
121
+
Glu
TTC
[ENA]
¢þ
>WENV180042644
LQAF01016547
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
206
131
-
Glu
TTC
[ENA]
¢þ
>WENV180044209
LQAJ01022837
[LQAJ] bioreactor metagenome; bioreactor_6 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
349
274
-
Glu
TTC
[ENA]
¢þ
>WENV181225238
OFDH01018744
[OFDH] metagenome; hydrothermal vent
350
275
-
Glu
TTC
[ENA]
¢þ
>WENV181226442
OFDL01002638
[OFDL] metagenome; hydrothermal vent
1341
1266
-
Glu
TTC
[ENA]
¢þ
>W141169716
AXWP01000011
Gammaproteobacteria
Psychromonas arctica DSM 14288 [AXWP]
85537
85612
+
Glu
TTC
[ENA]
¡û
>W141252229
CBRF010000176
Gammaproteobacteria
Psychromonas sp. SP041 [CBRF]
832
757
-
Glu
TTC
[ENA]
¡û
>WENV170012896
ASRP01012251
[ASRP] bioreactor metagenome; day 140 sample from continuous culture bioreactor inoculated with sediment from the German Wadden
190
265
+
Glu
TTC
[ENA]
¢þ
>W09105814
AAQS01000017
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
72284
72359
+
Glu
TTC
[ENA]
¡û
>W09105821
AAQS01000030
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
1994
2069
+
Glu
TTC
[ENA]
¡û
>W09105824
AAQS01000033
Gammaproteobacteria
Psychromonas ingrahamii 37 [AAQS]
932
1007
+
Glu
TTC
[ENA]
¡û
>C131013783
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
49463
49538
+
Glu
TTC
[Ensembl]
¡û
>C131013784
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
56164
56239
+
Glu
TTC
[Ensembl]
¡û
>C131013785
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
73001
73076
+
Glu
TTC
[Ensembl]
¡û
>C131013786
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
109724
109799
+
Glu
TTC
[Ensembl]
¡û
>C131013792
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
562439
562514
+
Glu
TTC
[Ensembl]
¡û
>C131013842
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2685910
2685835
-
Glu
TTC
[Ensembl]
¡û
>C131013844
CP004404
Gammaproteobacteria
Psychromonas sp. CNPT3 [CP004404]
2561706
2561631
-
Glu
TTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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