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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510756 (23 seq.)
>W131158633
AQUI01000002
Actinomycetota
Actinopolyspora halophila DSM 43834 [AQUI]
930050
930123
+
Ala
CGC
[ENA]
¡û
>W131163129
AQZN01000011
Actinomycetota
Actinopolyspora mortivallis DSM 44261 [AQZN]
290897
290822
-
Ala
CGC
[ENA]
¡û
>C171033862
CP014859
Actinomycetota
Actinoalloteichus hymeniacidonis HPA177 [CP014859]
672726
672801
+
Ala
CGC
-
¡û
>C171045470
CP016076
Actinomycetota
Actinoalloteichus fjordicus ADI127-7 [CP016076]
702094
702169
+
Ala
CGC
-
¡û
>C171045517
CP016077
Actinomycetota
Actinoalloteichus sp. GBA129-24 [CP016077]
717465
717540
+
Ala
CGC
-
¡û
>W141170069
AXWW01000025
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
27727
27800
+
Ala
CGC
[ENA]
¡û
>WENV170024106
BCQL01020484
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
543
618
+
Ala
CGC
[ENA]
¢þ
>C181067250
CP022521
Actinomycetota
Actinoalloteichus hoggarensis DSM 45943 [CP022521]
675018
675091
+
Ala
CGC
-
¡û
>C181072144
CP022752
Actinomycetota
Actinopolyspora erythraea YIM 90600 [CP022752]
767204
767278
+
Ala
CGC
-
¡û
>W141758717
JNYU01000792
Actinomycetota
Umezawaea tangerina [JNYU]
112
37
-
Ala
CGC
[ENA]
¡û
>W1810363879
PVSR01000005
Actinomycetota
Actinopolyspora mortivallis M5A [PVSR]
124275
124349
+
Ala
CGC
[ENA]
¡û
>W1810364405
PVTF01000001
Actinomycetota
Umezawaea tangerina DSM 44720 [PVTF]
913041
913115
+
Ala
CGC
[ENA]
¡û
>W1810759004
QPJC01000006
Actinomycetota
Halopolyspora algeriensis CECT 8575 [QPJC]
194713
194786
+
Ala
CGC
[ENA]
¡û
>C151105060
LN850107
Actinomycetota
Alloactinosynnema sp. L-07 [LN850107]
6563875
6563948
+
Ala
CGC
-
¡û
>W1511307049
JPMV01000032
Actinomycetota
Actinopolyspora erythraea YIM 90600 [JPMV]
112989
112914
-
Ala
CGC
[ENA]
¡û
>W1710518154
FNDV01000005
Actinomycetota
Actinokineospora alba album [FNDV]
280203
280130
-
Ala
CGC
[ENA]
¡û
>W1710520296
FNFM01000009
Actinomycetota
Actinopolyspora mzabensis [FNFM]
90437
90512
+
Ala
CGC
[ENA]
¡û
>W1710524873
FNJB01000008
Actinomycetota
Actinokineospora alba album [FNJB]
251527
251454
-
Ala
CGC
[ENA]
¡û
>W1710525598
FNJR01000001
Actinomycetota
Actinopolyspora xinjiangensis [FNJR]
192131
192056
-
Ala
CGC
[ENA]
¡û
>W1710526803
FNKO01000002
Actinomycetota
Actinopolyspora saharensis [FNKO]
825716
825643
-
Ala
CGC
[ENA]
¡û
>W1710551755
FOGI01000007
Actinomycetota
Actinokineospora terrae [FOGI]
347707
347780
+
Ala
CGC
[ENA]
¡û
>W1710559918
FOMZ01000010
Actinomycetota
Actinopolyspora alba [FOMZ]
213610
213535
-
Ala
CGC
[ENA]
¡û
>W1710577316
FPAT01000002
Actinomycetota
Actinopolyspora righensis [FPAT]
378168
378243
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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