This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.510825 (63 seq.)
>W1710786608
LJJA01000025
Bacillota
Bacillus sp. FJAT-21955 [LJJA]
1460
1530
+
Cys
GCA
[ENA]
¡û
>W131046270
AMSH01000128
Bacillota
Bacillus xiamenensis HYC-10 [AMSH]
520
590
+
Cys
GCA
[ENA]
¡û
>W131066292
ANOK01000010
Bacillota
Calidifontibacillus oryziterrae ZYK [ANOK]
39112
39042
-
Cys
GCA
[ENA]
¡û
>W1711064924
LSBB01000020
Bacillota
Bacillus atrophaeus [LSBB]
1440
1510
+
Cys
GCA
[ENA]
¡û
>C171067885
CP017786
Bacillota
Bacillus xiamenensis VV3 [CP017786]
758258
758188
-
Cys
GCA
-
¡û
>W141041353
AMBY01000050
Bacillota
Bacillus cereus H-hrb01 [AMBY]
293160
293090
-
Cys
GCA
[ENA]
¡û
>W141071536
ASJD01000004
Bacillota
Bacillus safensis FO-36b [ASJD]
305757
305687
-
Cys
GCA
[ENA]
¡û
>WENV182037718
OHDD01013593
[OHDD] human gut metagenome; feces
163
236
+
Cys
GCA
[ENA]
¢þ
>WENV183312281
OLVO01093168
[OLVO] human gut metagenome; faeces
10
83
+
Cys
GCA
[ENA]
¢þ
>C181062095
CP022319
Bacillota
Bacillus altitudinis SGAir0031 [CP022319]
879396
879466
+
Cys
GCA
-
¡û
>C191050246
CP027034
Bacillota
Bacillus pumilus 150a [CP027034]
884254
884324
+
Cys
GCA
-
¡û
>W141713861
JMTJ01000003
Bacillota
Bacillus atrophaeus subsp. niger [JMTJ]
3249267
3249197
-
Cys
GCA
[ENA]
¡û
>W141753953
JNVC02000024
Bacillota
Metabacillus indicus cibi [JNVC]
307
380
+
Cys
GCA
[ENA]
¡û
>W1910183643
BJNX01000005
Bacillota
Bacillus atrophaeus NBRC 15407 [BJNX]
300377
300307
-
Cys
GCA
[ENA]
¡û
>W1910810671
MULS01000002
Bacillota
Bacillus pumilus 104 [MULS]
1778340
1778270
-
Cys
GCA
[ENA]
¡û
>W1910976894
NKHG01000027
Bacillota
Bacillus pumilus 36R_ATNSAL [NKHG]
1437
1507
+
Cys
GCA
[ENA]
¡û
>W1910976970
NKHH01000017
Bacillota
Bacillus safensis 13L_LOBSAL [NKHH]
1366
1436
+
Cys
GCA
[ENA]
¡û
>W1911634418
PVRB01000007
Bacillota
Bacillus sp. LNXM65 [PVRB]
287737
287667
-
Cys
GCA
[ENA]
¡û
>W1911634525
PVRE01000002
Bacillota
Bacillus sp. MZGC1 [PVRE]
1489
1559
+
Cys
GCA
[ENA]
¡û
>W1911634581
PVRG01000001
Bacillota
Bacillus sp. CJCL2 [PVRG]
1523
1593
+
Cys
GCA
[ENA]
¡û
>W1911638595
PVWX01000003
Bacillota
Bacillus sp. LNXM12-1 [PVWX]
453898
453828
-
Cys
GCA
[ENA]
¡û
>W1810103702
PGUX01000011
Bacillota
Bacillus safensis V21-33 [PGUX]
1005176
1005106
-
Cys
GCA
[ENA]
¡û
>W1810236025
PPGB01000003
Bacillota
Bacillus stratosphericus MRPD-01 [PPGB]
320598
320528
-
Cys
GCA
[ENA]
¡û
>W1810361230
PVQK01000001
Bacillota
Bacillus sp. NMCN6 [PVQK]
1492
1562
+
Cys
GCA
[ENA]
¡û
>W1810361300
PVQL01000001
Bacillota
Bacillus sp. NMCN1 [PVQL]
1492
1562
+
Cys
GCA
[ENA]
¡û
>W1810361801
PVQS01000001
Bacillota
Bacillus safensis GBSW22 [PVQS]
1497351
1497281
-
Cys
GCA
[ENA]
¡û
>W1810361934
PVQU01000002
Bacillota
Bacillus pumilus NMSW10 [PVQU]
1534
1604
+
Cys
GCA
[ENA]
¡û
>W1810362110
PVQX01000001
Bacillota
Bacillus pumilus LNTW65 [PVQX]
1568
1638
+
Cys
GCA
[ENA]
¡û
>W1810362213
PVQY01000012
Bacillota
Bacillus sp. GBSC66 [PVQY]
65323
65253
-
Cys
GCA
[ENA]
¡û
>W1810362236
PVQZ01000001
Bacillota
Bacillus sp. NMCC46 [PVQZ]
1052612
1052542
-
Cys
GCA
[ENA]
¡û
>W1810362388
PVRC01000006
Bacillota
Bacillus sp. GBSW2 [PVRC]
315988
315918
-
Cys
GCA
[ENA]
¡û
>W1810362511
PVRH01000002
Bacillota
Bacillus sp. NMTD17 [PVRH]
843357
843287
-
Cys
GCA
[ENA]
¡û
>W1810362567
PVRI01000001
Bacillota
Bacillus sp. YBWC18 [PVRI]
1523
1593
+
Cys
GCA
[ENA]
¡û
>W1810365988
PVWA01000001
Bacillota
Bacillus atrophaeus CKL1 [PVWA]
1253766
1253696
-
Cys
GCA
[ENA]
¡û
>W1810576451
QENN01000006
Bacillota
Bacillus pumilus 124 [QENN]
1568
1638
+
Cys
GCA
[ENA]
¡û
>W1810595790
QGGD01000121
Bacillota
Bacillus altitudinis lc5 [QGGD]
123858
123788
-
Cys
GCA
[ENA]
¡û
>W1810657870
QJIZ01000023
Bacillota
Bacillus pumilus MG52 [QJIZ]
1540
1610
+
Cys
GCA
[ENA]
¡û
>W1810658226
QJJE01000009
Bacillota
Bacillus pumilus MG84 [QJJE]
451
521
+
Cys
GCA
[ENA]
¡û
>W1810697642
QLVI01000012
Bacillota
Bacillus pumilus EZ-C07 [QLVI]
1444
1514
+
Cys
GCA
[ENA]
¡û
>W1810888434
QUQY01000002
Bacillota
Bacillus sp. HMG [QUQY]
1531
1601
+
Cys
GCA
[ENA]
¡û
>C151023417
CP007436
Bacillota
Bacillus pumilus MTCC B6033 [CP007436]
883189
883259
+
Cys
GCA
[Ensembl]
¡û
>C151071920
CP010778
Bacillota
Bacillus atrophaeus [CP010778]
337011
337081
+
Cys
GCA
[Ensembl]
¡û
>C151078035
CP011150
Bacillota
Bacillus altitudinis W3 [CP011150]
870390
870460
+
Cys
GCA
[Ensembl]
¡û
>W1510619766
CUWS01000155
Bacillota
Bacillus atrophaeus 930029 [CUWS]
157
87
-
Cys
GCA
[ENA]
¡û
>W11136406
AEFV01000007
Bacillota
Bacillus atrophaeus ATCC 49822-1 [AEFV]
131366
131296
-
Cys
GCA
[ENA]
¡û
>W11136543
AEFX01000002
Bacillota
Bacillus atrophaeus BACI051-E [AEFX]
1421
1491
+
Cys
GCA
[ENA]
¡û
>W1511502110
JXCK01000029
Bacillota
Bacillus safensis B4107 [JXCK]
1777
1847
+
Cys
GCA
[ENA]
¡û
>W1511582787
LATH01000001
Bacillota
Bacillus safensis JPL_MERTA8-2 [LATH]
1706
1776
+
Cys
GCA
[ENA]
¡û
>W1511641374
LDUS01000011
Bacillota
Bacillus safensis LK12 [LDUS]
1386
1456
+
Cys
GCA
[ENA]
¡û
>W1511643147
LDWK01000014
Bacillota
Bacillus safensis LK21 [LDWK]
1388
1458
+
Cys
GCA
[ENA]
¡û
>W11177904
AGBY01000136
Bacillota
Bacillus altitudinis S-1 [AGBY]
9
79
+
Cys
GCA
[ENA]
¡û
>C161002081
AP014928
Bacillota
Bacillus pumilus TUAT1 [AP014928]
890133
890203
+
Cys
GCA
-
¡û
>C161040991
CP012329
Bacillota
Bacillus altitudinis NJ-M2 [CP012329]
3788762
3788692
-
Cys
GCA
-
¡û
>C161078211
CP014840
Bacillota
Bacillus subtilis subsp. globigii ATCC 49760 [CP014840]
3067415
3067345
-
Cys
GCA
-
¡û
>W1610073301
BCVV01000005
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
300305
300235
-
Cys
GCA
[ENA]
¡û
>W1610081182
BDDH01000002
Bacillota
Bacillus atrophaeus [BDDH]
1682
1752
+
Cys
GCA
[ENA]
¡û
>W1610211555
FCSL01000002
Bacillota
Streptococcus pneumoniae [FCSL]
6085
6155
+
Cys
GCA
[ENA]
¡û
>W1610650463
LJJA01000025
Bacillota
Bacillus sp. FJAT-21955 [LJJA]
1460
1530
+
Cys
GCA
[ENA]
¡û
>W1610905713
LSBB01000020
Bacillota
Bacillus atrophaeus [LSBB]
1440
1510
+
Cys
GCA
[ENA]
¡û
>W1710070419
BCVV01000005
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
300305
300235
-
Cys
GCA
[ENA]
¡û
>W1710079833
BDDH01000002
Bacillota
Bacillus atrophaeus [BDDH]
1682
1752
+
Cys
GCA
[ENA]
¡û
>W1710212189
FCSL01000002
Bacillota
Streptococcus pneumoniae [FCSL]
6085
6155
+
Cys
GCA
[ENA]
¡û
>W1710580619
FPJL01000037
Bacillota
Bacillus altitudinis ru9509.4 [FPJL]
1754
1824
+
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK