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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511114 (125 seq.)
>W1710871512
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1208993
1209068
+
Lys
TTT
[ENA]
¡û
>W1710871513
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1209141
1209216
+
Lys
TTT
[ENA]
¡û
>W1710871514
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1209414
1209489
+
Lys
TTT
[ENA]
¡û
>W1710871542
LMLJ01000008
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
22842
22767
-
Lys
TTT
[ENA]
¡û
>WENV170707804
LNAP01034601
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1035
960
-
Lys
TTT
[ENA]
¢þ
>WENV170780023
MAAA01009312
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
5
80
+
Lys
TTT
[ENA]
¢þ
>WENV170780218
MAAA01021721
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
2866
2791
-
Lys
TTT
[ENA]
¢þ
>WENV170780219
MAAA01021722
[MAAA] seawater metagenome; sample BD02T6 sea water enriched with oil for 6 days
147
222
+
Lys
TTT
[ENA]
¢þ
>WENV170781631
MAAB01039456
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
243
168
-
Lys
TTT
[ENA]
¢þ
>WENV170781632
MAAB01039456
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
81
6
-
Lys
TTT
[ENA]
¢þ
>WENV170781667
MAAB01040989
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
6
81
+
Lys
TTT
[ENA]
¢þ
>WENV170781711
MAAB01041841
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2256
2331
+
Lys
TTT
[ENA]
¢þ
>WENV170781717
MAAB01042068
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
2899
2974
+
Lys
TTT
[ENA]
¢þ
>WENV170781718
MAAB01042068
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
3049
3124
+
Lys
TTT
[ENA]
¢þ
>WENV170781748
MAAB01043107
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1447
1372
-
Lys
TTT
[ENA]
¢þ
>WENV170781749
MAAB01043107
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1308
1233
-
Lys
TTT
[ENA]
¢þ
>WENV170781750
MAAB01043107
[MAAB] seawater metagenome; sample BD02T18 sea water enriched with oil for 18 days
1160
1085
-
Lys
TTT
[ENA]
¢þ
>C181035793
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2342364
2342289
-
Lys
TTT
-
¡û
>C181035794
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2342084
2342009
-
Lys
TTT
-
¡û
>C181035795
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2341940
2341865
-
Lys
TTT
-
¡û
>C181035810
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
186954
186879
-
Lys
TTT
-
¡û
>C181179226
CP029488
Gammaproteobacteria
Salinisphaera sp. LB1 [CP029488]
3209249
3209324
+
Lys
TTT
-
¡û
>C191087428
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412913
3412838
-
Lys
TTT
-
¡û
>C191087429
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412634
3412559
-
Lys
TTT
-
¡û
>C191087430
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3412356
3412281
-
Lys
TTT
-
¡û
>C191087443
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
1215429
1215354
-
Lys
TTT
-
¡û
>C191126465
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3334111
3334036
-
Lys
TTT
-
¡û
>C191126466
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3333832
3333757
-
Lys
TTT
-
¡û
>C191126467
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3333554
3333479
-
Lys
TTT
-
¡û
>C191126480
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
1157324
1157249
-
Lys
TTT
-
¡û
>C191126541
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334808
3334733
-
Lys
TTT
-
¡û
>C191126542
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334529
3334454
-
Lys
TTT
-
¡û
>C191126543
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3334251
3334176
-
Lys
TTT
-
¡û
>C191126556
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
1158021
1157946
-
Lys
TTT
-
¡û
>C191126618
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3452295
3452220
-
Lys
TTT
-
¡û
>C191126619
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3452016
3451941
-
Lys
TTT
-
¡û
>C191126620
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3451738
3451663
-
Lys
TTT
-
¡û
>C191126633
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
1298986
1298911
-
Lys
TTT
-
¡û
>C191151794
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
3900906
3900831
-
Lys
TTT
-
¡û
>C191151807
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1106500
1106425
-
Lys
TTT
-
¡û
>C191151808
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1106281
1106206
-
Lys
TTT
-
¡û
>C191151809
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1106006
1105931
-
Lys
TTT
-
¡û
>W141710412
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
119563
119638
+
Lys
TTT
[ENA]
¡û
>W141710413
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
119683
119758
+
Lys
TTT
[ENA]
¡û
>W141710414
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
119796
119871
+
Lys
TTT
[ENA]
¡û
>W141710415
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
119951
120026
+
Lys
TTT
[ENA]
¡û
>W141710436
JMPJ01000060
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
4954
5029
+
Lys
TTT
[ENA]
¡û
>W141710706
JMPO01000003
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
75459
75384
-
Lys
TTT
[ENA]
¡û
>W141710766
JMPO01000189
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
134
59
-
Lys
TTT
[ENA]
¡û
>W141816156
JQJR01000002
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
85
160
+
Lys
TTT
[ENA]
¡û
>W141816162
JQJR01000003
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
470470
470545
+
Lys
TTT
[ENA]
¡û
>W141816169
JQJR01000004
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
1
76
+
Lys
TTT
[ENA]
¡û
>W1910584883
JYDE01000015
Gammaproteobacteria
Rahnella inusitata DSM 30078 [JYDE]
260761
260686
-
Lys
TTT
[ENA]
¡û
>W1910584939
JYDF01000081
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
150
75
-
Lys
TTT
[ENA]
¡û
>W1910584947
JYDF01000100
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
41634
41559
-
Lys
TTT
[ENA]
¡û
>W1910584950
JYDF01000117
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
21058
20983
-
Lys
TTT
[ENA]
¡û
>W1910584951
JYDF01000117
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
20917
20842
-
Lys
TTT
[ENA]
¡û
>W1910584975
JYDG01000051
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
40423
40498
+
Lys
TTT
[ENA]
¡û
>W1910584989
JYDG01000095
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
24705
24630
-
Lys
TTT
[ENA]
¡û
>W1910649368
LXYV01000787
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
25190
25265
+
Lys
TTT
[ENA]
¡û
>W1910649381
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
262551
262476
-
Lys
TTT
[ENA]
¡û
>W1910649382
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
262431
262356
-
Lys
TTT
[ENA]
¡û
>W1910649383
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
262318
262243
-
Lys
TTT
[ENA]
¡û
>W1910649384
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
262165
262090
-
Lys
TTT
[ENA]
¡û
>W1910655778
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
99124
99199
+
Lys
TTT
[ENA]
¡û
>W1910655779
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
99401
99476
+
Lys
TTT
[ENA]
¡û
>W1910655780
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
99669
99744
+
Lys
TTT
[ENA]
¡û
>W1910655792
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
2207024
2207099
+
Lys
TTT
[ENA]
¡û
>W1910696146
MEHU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
1067085
1067160
+
Lys
TTT
[ENA]
¡û
>W1910696203
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827631
827556
-
Lys
TTT
[ENA]
¡û
>W1910696204
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827483
827408
-
Lys
TTT
[ENA]
¡û
>W1910696205
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
827349
827274
-
Lys
TTT
[ENA]
¡û
>W1910750407
MJIB01000005
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
355882
355807
-
Lys
TTT
[ENA]
¡û
>W1910750408
MJIB01000005
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
355734
355659
-
Lys
TTT
[ENA]
¡û
>W1910750409
MJIB01000005
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
355461
355386
-
Lys
TTT
[ENA]
¡û
>W1910750448
MJIB01000021
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
978773
978698
-
Lys
TTT
[ENA]
¡û
>W1911239287
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2156684
2156759
+
Lys
TTT
[ENA]
¡û
>W1911239288
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2156833
2156908
+
Lys
TTT
[ENA]
¡û
>W1911239289
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2157112
2157187
+
Lys
TTT
[ENA]
¡û
>W1911239300
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
4156286
4156361
+
Lys
TTT
[ENA]
¡û
>W1911686117
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1945289
1945364
+
Lys
TTT
[ENA]
¡û
>W1911686118
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1945572
1945647
+
Lys
TTT
[ENA]
¡û
>W1911686119
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1945851
1945926
+
Lys
TTT
[ENA]
¡û
>W1911686129
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
3476452
3476527
+
Lys
TTT
[ENA]
¡û
>W1911693608
QLTF01000002
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
503452
503527
+
Lys
TTT
[ENA]
¡û
>W1911693622
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
208557
208482
-
Lys
TTT
[ENA]
¡û
>W1911693623
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
208278
208203
-
Lys
TTT
[ENA]
¡û
>W1911693624
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
208000
207925
-
Lys
TTT
[ENA]
¡û
>W1911824518
QZWI01000001
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
557398
557323
-
Lys
TTT
[ENA]
¡û
>W1911824532
QZWI01000003
Gammaproteobacteria
Rahnella bruchi DSM 27398 [QZWI]
327498
327573
+
Lys
TTT
[ENA]
¡û
>W1810149975
PITQ01000002
Gammaproteobacteria
Rahnella sp. AA [PITQ]
553941
554016
+
Lys
TTT
[ENA]
¡û
>W1810149984
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455427
455352
-
Lys
TTT
[ENA]
¡û
>W1810149985
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455266
455191
-
Lys
TTT
[ENA]
¡û
>W1810149986
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
455144
455069
-
Lys
TTT
[ENA]
¡û
>W1810239910
PPSR01000001
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
156049
155974
-
Lys
TTT
[ENA]
¡û
>W1810239927
PPSR01000016
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
104223
104148
-
Lys
TTT
[ENA]
¡û
>W1810239928
PPSR01000016
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
103944
103869
-
Lys
TTT
[ENA]
¡û
>C11118358
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3386434
3386359
-
Lys
TTT
[Ensembl]
¡û
>C11118359
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3386155
3386080
-
Lys
TTT
[Ensembl]
¡û
>C11118360
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3386011
3385936
-
Lys
TTT
[Ensembl]
¡û
>C11118373
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
1197752
1197677
-
Lys
TTT
[Ensembl]
¡û
>W1511402690
JTKH01000015
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
39
114
+
Lys
TTT
[ENA]
¡û
>W1511402697
JTKH01000017
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-2 [JTKH]
781
706
-
Lys
TTT
[ENA]
¡û
>W1511402738
JTKI01000005
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
1212
1137
-
Lys
TTT
[ENA]
¡û
>W1511402753
JTKI01000009
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
563
488
-
Lys
TTT
[ENA]
¡û
>W1511402813
JTKI01000027
Gammaproteobacteria
Vibrio renipiscarius DCR 1-4-12 [JTKI]
497
422
-
Lys
TTT
[ENA]
¡û
>W1511433719
JUHL01000002
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
95201
95126
-
Lys
TTT
[ENA]
¡û
>W1511433720
JUHL01000002
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
94926
94851
-
Lys
TTT
[ENA]
¡û
>W1511433721
JUHL01000002
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
94785
94710
-
Lys
TTT
[ENA]
¡û
>W1511433749
JUHL01000011
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
30611
30686
+
Lys
TTT
[ENA]
¡û
>W1511433794
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
258904
258979
+
Lys
TTT
[ENA]
¡û
>W1511433795
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
259183
259258
+
Lys
TTT
[ENA]
¡û
>W1511433796
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
259324
259399
+
Lys
TTT
[ENA]
¡û
>W1511433808
JUHM01000008
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
198453
198378
-
Lys
TTT
[ENA]
¡û
>C121009649
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3378745
3378670
-
Lys
TTT
[Ensembl]
¡û
>C121009650
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3378466
3378391
-
Lys
TTT
[Ensembl]
¡û
>C121009651
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3378325
3378250
-
Lys
TTT
[Ensembl]
¡û
>C121009665
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
1236722
1236647
-
Lys
TTT
[Ensembl]
¡û
>C121012503
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3451145
3451070
-
Lys
TTT
[Ensembl]
¡û
>C121012504
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3450864
3450789
-
Lys
TTT
[Ensembl]
¡û
>C121012519
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
1161220
1161145
-
Lys
TTT
[Ensembl]
¡û
>W1610733858
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1208993
1209068
+
Lys
TTT
[ENA]
¡û
>W1610733859
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1209141
1209216
+
Lys
TTT
[ENA]
¡û
>W1610733860
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1209414
1209489
+
Lys
TTT
[ENA]
¡û
>W1610733888
LMLJ01000008
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
22842
22767
-
Lys
TTT
[ENA]
¡û
Select
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(Sample source for ENV)
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