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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.511115 (23 seq.)
>WENV170708111
LNAP01050743
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
791
716
-
Lys
CTT
[ENA]
¢þ
>C181035796
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2190969
2190894
-
Lys
CTT
-
¡û
>C191087431
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3288034
3287959
-
Lys
CTT
-
¡û
>C191126468
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3209179
3209104
-
Lys
CTT
-
¡û
>C191126544
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3209876
3209801
-
Lys
CTT
-
¡û
>C191126621
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3327417
3327342
-
Lys
CTT
-
¡û
>C191151810
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
981365
981290
-
Lys
CTT
-
¡û
>W141710720
JMPO01000108
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
161201
161126
-
Lys
CTT
[ENA]
¡û
>W141816170
JQJR01000004
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
125518
125593
+
Lys
CTT
[ENA]
¡û
>W1910584929
JYDF01000066
Gammaproteobacteria
Rahnella sp. NRRL B-41462 [JYDF]
23298
23373
+
Lys
CTT
[ENA]
¡û
>W1910584993
JYDG01000104
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
134111
134036
-
Lys
CTT
[ENA]
¡û
>W1910655781
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
187550
187625
+
Lys
CTT
[ENA]
¡û
>W1910696206
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
743166
743091
-
Lys
CTT
[ENA]
¡û
>W1911239290
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2282443
2282518
+
Lys
CTT
[ENA]
¡û
>W1911686120
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
2069304
2069379
+
Lys
CTT
[ENA]
¡û
>W1911693625
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
83759
83684
-
Lys
CTT
[ENA]
¡û
>W1810149987
PITQ01000004
Gammaproteobacteria
Rahnella sp. AA [PITQ]
333755
333680
-
Lys
CTT
[ENA]
¡û
>W1810239943
PPSR01000027
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
19897
19972
+
Lys
CTT
[ENA]
¡û
>C11118361
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3261812
3261737
-
Lys
CTT
[Ensembl]
¡û
>W1511433736
JUHL01000006
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
364572
364497
-
Lys
CTT
[ENA]
¡û
>W1511433822
JUHM01000036
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
42186
42261
+
Lys
CTT
[ENA]
¡û
>C121009652
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3258730
3258655
-
Lys
CTT
[Ensembl]
¡û
>C121012506
CP003403
Gammaproteobacteria
Rahnella aquatilis HX2 [CP003403]
3326394
3326319
-
Lys
CTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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