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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.512328 (20 seq.)
>C017467
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1354479
1354554
+
Ala
TGC
[Ensembl]
¡û
>C017472
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1805302
1805377
+
Ala
TGC
[Ensembl]
¡û
>C017488
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
3334467
3334392
-
Ala
TGC
[Ensembl]
¡û
>C017492
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
2886192
2886117
-
Ala
TGC
[Ensembl]
¡û
>w018118
AASH01000049
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
2563
2640
+
Ala
TGC
[ENA]
¡û
>WENV180308910
OBJR01314877
[OBJR] soil metagenome; soil
182
257
+
Ala
TGC
[ENA]
¢þ
>WENV180311830
OBJT01609815
[OBJT] soil metagenome; soil
105
180
+
Ala
TGC
[ENA]
¢þ
>WENV180345115
OBLM01038803
[OBLM] soil metagenome; soil
108
33
-
Ala
TGC
[ENA]
¢þ
>WENV180584061
OCNO01012186
[OCNO] soil metagenome; Clay
204
279
+
Ala
TGC
[ENA]
¢þ
>WENV183703310
PDVJ01008721
[PDVJ] alkali sediment metagenome; glacial lake sediment
2241
2166
-
Ala
TGC
[ENA]
¢þ
>WENV170002633
AGTN01088447
[AGTN] bioreactor metagenome; poplar biomass
599
673
+
Ala
TGC
[ENA]
¢þ
>WENV170003357
AGTN01310821
[AGTN] bioreactor metagenome; poplar biomass
201
276
+
Ala
TGC
[ENA]
¢þ
>WENV170660592
JXWU01000725
[JXWU] soil metagenome; rice field; organic control Plot
242
317
+
Ala
TGC
[ENA]
¢þ
>WENV170707771
LNAP01033213
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1437
1362
-
Ala
TGC
[ENA]
¢þ
>W09103552
AAJH01000022
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
9149
9074
-
Ala
TGC
[ENA]
¡û
>W09103558
AAJH01000045
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
1039
1114
+
Ala
TGC
[ENA]
¡û
>C09106349
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
2113673
2113748
+
Ala
TGC
[Ensembl]
¡û
>C09106367
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
3988820
3988745
-
Ala
TGC
[Ensembl]
¡û
>W1610046461
BBCJ01000057
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
3273
3198
-
Ala
TGC
[ENA]
¡û
>W1710043257
BBCJ01000057
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
3273
3198
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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