This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.515573 (57 seq.)
>W1710854957
LLXX01000226
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
38990
38917
-
Gly
CCC
[ENA]
¡û
>W1710861432
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1127978
1127905
-
Gly
CCC
[ENA]
¡û
>W131164075
ARAG01000002
Alphaproteobacteria
Bradyrhizobium elkanii USDA 76 [ARAG]
824312
824239
-
Gly
CCC
[ENA]
¡û
>W1711129631
LUUB01000116
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
16942
16869
-
Gly
CCC
[ENA]
¡û
>W131217288
ATWP01000001
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
306409
306482
+
Gly
CCC
[ENA]
¡û
>W131227233
AUEZ01000039
Alphaproteobacteria
Bradyrhizobium sp. Ai1a-2 [AUEZ]
42455
42528
+
Gly
CCC
[ENA]
¡û
>W1711501130
MKRG01000022
Alphaproteobacteria
Afipia sp. 62-7 [MKRG]
32892
32819
-
Gly
CCC
[ENA]
¡û
>W1711505857
MKVX01000002
Alphaproteobacteria
Rhizobiales bacterium 62-47 [MKVX]
133004
132931
-
Gly
CCC
[ENA]
¡û
>C171064660
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
1201054
1201127
+
Gly
CCC
-
¡û
>C004035
CP000494
Alphaproteobacteria
Bradyrhizobium sp. BTAi1 [CP000494]
799661
799734
+
Gly
CCC
[Ensembl]
¡û
>C018930
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
1026149
1026222
+
Gly
CCC
[Ensembl]
¡û
>C019029
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
898097
898170
+
Gly
CCC
[Ensembl]
¡û
>w012980
AAMY01000002
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
146093
146168
+
Gly
CCC
[ENA]
¡û
>WENV180304757
OBJI01373531
[OBJI] soil metagenome; soil
166
93
-
Gly
CCC
[ENA]
¢þ
>W141063907
APJI01000015
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
148155
148082
-
Gly
CCC
[ENA]
¡û
>WENV181222534
OFDC01000004
[OFDC] hot springs metagenome; Water
52596
52523
-
Gly
CCC
[ENA]
¢þ
>W141150227
AXAF01000008
Alphaproteobacteria
Bradyrhizobium ottawaense USDA 4 [AXAF]
405826
405753
-
Gly
CCC
[ENA]
¡û
>W141150364
AXAI01000005
Alphaproteobacteria
Bradyrhizobium sp. Tv2a-2 [AXAI]
279887
279814
-
Gly
CCC
[ENA]
¡û
>W141150711
AXAP01000010
Alphaproteobacteria
Bradyrhizobium elkanii WSM2783 [AXAP]
143415
143488
+
Gly
CCC
[ENA]
¡û
>W141220401
AZXU01000001
Alphaproteobacteria
Bradyrhizobium sp. WSM1417 [AZXU]
433641
433568
-
Gly
CCC
[ENA]
¡û
>W141233879
BAWE01000003
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
56366
56439
+
Gly
CCC
[ENA]
¡û
>W141240109
CAFK01000350
Alphaproteobacteria
Bradyrhizobium sp. STM 3843 [CAFK]
16100
16027
-
Gly
CCC
[ENA]
¡û
>W141278093
JAFC01000007
Alphaproteobacteria
Bradyrhizobium elkanii USDA 94 [JAFC]
170270
170197
-
Gly
CCC
[ENA]
¡û
>WENV182955035
OKWB01007116
[OKWB] human gut metagenome; stool
430
357
-
Gly
CCC
[ENA]
¢þ
>WENV183691081
ORMF011700635
[ORMF] groundwater metagenome; groundwater
1404
1477
+
Gly
CCC
[ENA]
¢þ
>WENV183691334
ORMF011743205
[ORMF] groundwater metagenome; groundwater
296
223
-
Gly
CCC
[ENA]
¢þ
>WENV183691843
ORMF011828529
[ORMF] groundwater metagenome; groundwater
2333
2260
-
Gly
CCC
[ENA]
¢þ
>WENV183740594
PJUF01003967
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
885
812
-
Gly
CCC
[ENA]
¢þ
>WENV170652656
JRYH01011925
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
7859
7786
-
Gly
CCC
[ENA]
¢þ
>C191029949
CP025086
Alphaproteobacteria
Methylovirgula ligni BW863 [CP025086]
92038
91965
-
Gly
CCC
-
¡û
>W141561559
JHYO01000004
Alphaproteobacteria
Terasakiella pusilla DSM 6293 [JHYO]
189075
189148
+
Gly
CCC
[ENA]
¡û
>W09102992
AAIS01000001
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
1097702
1097629
-
Gly
CCC
[ENA]
¡û
>W09104401
AALR01000001
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
464056
463983
-
Gly
CCC
[ENA]
¡û
>W1910568898
JHAA01000011
Alphaproteobacteria
Rhodopseudomonas palustris PSBS [JHAA]
35407
35334
-
Gly
CCC
[ENA]
¡û
>W1910599007
LBJM01000086
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
18485
18558
+
Gly
CCC
[ENA]
¡û
>W1911245266
NSJY01000005
Alphaproteobacteria
Bradyrhizobium sp. UFLA03-84 [NSJY]
452359
452286
-
Gly
CCC
[ENA]
¡û
>W1810400135
PYFW01000001
Alphaproteobacteria
Bradyrhizobium sp. MOS003 [PYFW]
754566
754639
+
Gly
CCC
[ENA]
¡û
>W1810672328
QJTI01000028
Alphaproteobacteria
Rhodopseudomonas faecalis JCM 11668 [QJTI]
13835
13908
+
Gly
CCC
[ENA]
¡û
>C10112184
CP002026
Alphaproteobacteria
Ancylobacter novellus DSM 506 [CP002026]
583009
583082
+
Gly
CCC
[Ensembl]
¡û
>W1511353626
JRPN01000018
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
395337
395264
-
Gly
CCC
[ENA]
¡û
>W1511533385
JYMT01000043
Alphaproteobacteria
Bradyrhizobium sp. LTSP885 [JYMT]
124402
124475
+
Gly
CCC
[ENA]
¡û
>W1511533433
JYMU01000055
Alphaproteobacteria
Bradyrhizobium sp. LTSPM299 [JYMU]
29517
29444
-
Gly
CCC
[ENA]
¡û
>C121000730
AP012279
Alphaproteobacteria
Bradyrhizobium cosmicum S23321 [AP012279]
6951177
6951104
-
Gly
CCC
[Ensembl]
¡û
>C161097205
CP016428
Alphaproteobacteria
Bradyrhizobium icense LMTR 13 [CP016428]
7795804
7795731
-
Gly
CCC
[Ensembl]
¡û
>W121036225
AHLW01000002
Alphaproteobacteria
Bradyrhizobium sp. WSM471 [AHLW]
852532
852459
-
Gly
CCC
[ENA]
¡û
>W121065325
AJPY01000056
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
4916
4989
+
Gly
CCC
[ENA]
¡û
>W121065407
AJPZ01000419
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
948
1021
+
Gly
CCC
[ENA]
¡û
>W121065534
AJQC01000341
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
11323
11250
-
Gly
CCC
[ENA]
¡û
>W121065614
AJQE01000098
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
37936
37863
-
Gly
CCC
[ENA]
¡û
>W1610549145
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
5583442
5583515
+
Gly
CCC
[ENA]
¡û
>W1610717298
LLXX01000226
Alphaproteobacteria
Bradyrhizobium valentinum [LLXX]
38990
38917
-
Gly
CCC
[ENA]
¡û
>W1610723778
LMDP01000002
Alphaproteobacteria
Afipia sp. Root123D2 [LMDP]
1127978
1127905
-
Gly
CCC
[ENA]
¡û
>W1610940704
LUUB01000116
Alphaproteobacteria
Bradyrhizobium centrolobii BR 10245 [LUUB]
16942
16869
-
Gly
CCC
[ENA]
¡û
>W1710505310
FMTP01000004
Alphaproteobacteria
Ancylobacter rudongensis [FMTP]
93581
93654
+
Gly
CCC
[ENA]
¡û
>W1710546036
FOBX01000019
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
29979
29906
-
Gly
CCC
[ENA]
¡û
>W1710569787
FOUS01000001
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
602780
602853
+
Gly
CCC
[ENA]
¡û
>W1710652719
JXDL01000001
Alphaproteobacteria
Bradyrhizobium sp. AT1 [JXDL]
5583442
5583515
+
Gly
CCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK