This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.51970 (50 seq.)
>W1710793538
LJPL01000020
Bacillota
Streptococcus pasteurianus [LJPL]
178
263
+
Leu
TAA
[ENA]
¡û
>W1711305606
MAMV01000021
Bacillota
Streptococcus gallolyticus subsp. gallolyticus [MAMV]
256
171
-
Leu
TAA
[ENA]
¡û
>WENV180118998
OASD01005273
[OASD] human gut metagenome; ENVO:feces
979
894
-
Leu
TAA
[ENA]
¢þ
>WENV180198787
OBAD01010077
[OBAD] human gut metagenome; ENVO:feces
335
250
-
Leu
TAA
[ENA]
¢þ
>W141091712
AUZG01000001
Bacillota
Streptococcus equinus ATCC 33317 [AUZG]
97
182
+
Leu
TAA
[ENA]
¡û
>WENV181351644
OFMP01031015
[OFMP] human gut metagenome; human gut
335
250
-
Leu
TAA
[ENA]
¢þ
>W141145884
AWVA01000126
Bacillota
Streptococcus sobrinus W1703 [AWVA]
92
179
+
Leu
TAA
[ENA]
¡û
>WENV181555554
OGIT01009503
[OGIT] metagenome; Human gut stool
756
671
-
Leu
TAA
[ENA]
¢þ
>WENV181891574
OGXO01038789
[OGXO] human gut metagenome; faeces
862
775
-
Leu
TAA
[ENA]
¢þ
>WENV182140666
OHKR01000669
[OHKR] human gut metagenome; feces
577
662
+
Leu
TAA
[ENA]
¢þ
>WENV182437500
OIJJ01005704
[OIJJ] human gut metagenome; human gut
128
213
+
Leu
TAA
[ENA]
¢þ
>WENV182441941
OIKE01007622
[OIKE] human gut metagenome; human gut
335
250
-
Leu
TAA
[ENA]
¢þ
>WENV182454129
OIML01007021
[OIML] human gut metagenome; human gut
312
227
-
Leu
TAA
[ENA]
¢þ
>WENV182454551
OIMM01011299
[OIMM] human gut metagenome; human gut
749
834
+
Leu
TAA
[ENA]
¢þ
>WENV182820376
OKAL01005380
[OKAL] human gut metagenome; human gut
329
244
-
Leu
TAA
[ENA]
¢þ
>WENV182842769
OKIG01000106
[OKIG] human gut metagenome; human gut
4670
4755
+
Leu
TAA
[ENA]
¢þ
>WENV182862035
OKPJ01000185
[OKPJ] human gut metagenome; human gut
28985
28900
-
Leu
TAA
[ENA]
¢þ
>WENV182958999
OKWI01000128
[OKWI] human gut metagenome; stool
173
258
+
Leu
TAA
[ENA]
¢þ
>WENV182962353
OKWN01000281
[OKWN] human gut metagenome; stool
30414
30329
-
Leu
TAA
[ENA]
¢þ
>WENV183609262
OODQ01003486
[OODQ] human gut metagenome; human gut
263
178
-
Leu
TAA
[ENA]
¢þ
>C181179336
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
24666
24753
+
Leu
TAA
-
¡û
>C181179378
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
1812989
1812902
-
Leu
TAA
-
¡û
>C181179403
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
24606
24693
+
Leu
TAA
-
¡û
>C181179450
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
1801604
1801517
-
Leu
TAA
-
¡û
>C181207714
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
21770
21855
+
Leu
TAA
-
¡û
>C181207724
LS483348
Bacillota
Streptococcus lutetiensis NCTC8738 [LS483348]
27601
27686
+
Leu
TAA
-
¡û
>C181211177
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
21771
21856
+
Leu
TAA
-
¡û
>C181211187
LS483403
Bacillota
Streptococcus lutetiensis NCTC13774 [LS483403]
27603
27688
+
Leu
TAA
-
¡û
>W141727290
JNCV01000003
Bacillota
Streptococcus macedonicus [JNCV]
565
650
+
Leu
TAA
[ENA]
¡û
>W1810904661
QVEM01000036
Bacillota
Streptococcus pasteurianus AM21-19 [QVEM]
711
626
-
Leu
TAA
[ENA]
¡û
>W1810905273
QVEY01000013
Bacillota
Streptococcus pasteurianus AF13-35 [QVEY]
49614
49529
-
Leu
TAA
[ENA]
¡û
>W1810907455
QVHT01000011
Bacillota
Streptococcus gallolyticus AM24-4 [QVHT]
593
678
+
Leu
TAA
[ENA]
¡û
>C11120554
AP012053
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 [AP012053]
22116
22201
+
Leu
TAA
[Ensembl]
¡û
>W11179142
AGGB01000399
Bacillota
Streptococcus sobrinus TCI-9 [AGGB]
451
364
-
Leu
TAA
[ENA]
¡û
>W11179299
AGGH01000362
Bacillota
Streptococcus sobrinus TCI-54 [AGGH]
58
145
+
Leu
TAA
[ENA]
¡û
>W11179335
AGGI01000359
Bacillota
Streptococcus sobrinus TCI-56 [AGGI]
190
103
-
Leu
TAA
[ENA]
¡û
>W11179420
AGGL01000211
Bacillota
Streptococcus sobrinus TCI-79 [AGGL]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179724
AGGV01000321
Bacillota
Streptococcus sobrinus TCI-348 [AGGV]
438
525
+
Leu
TAA
[ENA]
¡û
>W11179780
AGGX01000352
Bacillota
Streptococcus sobrinus TCI-352 [AGGX]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179895
AGHB01000286
Bacillota
Streptococcus sobrinus TCI-366 [AGHB]
60
147
+
Leu
TAA
[ENA]
¡û
>W11179920
AGHC01000287
Bacillota
Streptococcus sobrinus TCI-367 [AGHC]
451
364
-
Leu
TAA
[ENA]
¡û
>W11180060
AGHH01000347
Bacillota
Streptococcus sobrinus TCI-381 [AGHH]
49
136
+
Leu
TAA
[ENA]
¡û
>W11180266
AGHO01003754
Bacillota
Streptococcus sobrinus TCI-157 [AGHO]
290
203
-
Leu
TAA
[ENA]
¡û
>C121017434
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
21914
21999
+
Leu
TAA
[Ensembl]
¡û
>C121017444
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
27727
27812
+
Leu
TAA
[Ensembl]
¡û
>C121017479
FR824043
Bacillota
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 [FR824043]
344548
344633
+
Leu
TAA
[Ensembl]
¡û
>W1610032221
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
541
626
+
Leu
TAA
[ENA]
¡û
>W1610044869
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
485
570
+
Leu
TAA
[ENA]
¡û
>W1710029148
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
541
626
+
Leu
TAA
[ENA]
¡û
>W1710041967
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
485
570
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK