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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.522805 (13 seq.)
>W1711411630
MGTI01000119
Thermodesulfobacteriota
Desulfobacterales bacterium GWB2_56_26 [MGTI]
9151
9226
+
Val
TAC
[ENA]
¡û
>C007893
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889552
2889477
-
Val
TAC
[Ensembl]
¡û
>C007895
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889322
2889247
-
Val
TAC
[Ensembl]
¡û
>C007897
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2889095
2889020
-
Val
TAC
[Ensembl]
¡û
>C007899
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888869
2888794
-
Val
TAC
[Ensembl]
¡û
>C007901
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888642
2888567
-
Val
TAC
[Ensembl]
¡û
>C007903
CR522870
Thermodesulfobacteriota
Desulfotalea psychrophila LSv54 [CR522870]
2888414
2888339
-
Val
TAC
[Ensembl]
¡û
>WENV180296828
OBJA01003316
[OBJA] soil metagenome; sediment, water from around vicinity
1182
1107
-
Val
TAC
[ENA]
¢þ
>WENV170006360
AMWB02017940
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
12599
12674
+
Val
TAC
[ENA]
¢þ
>WENV170572198
FLOH01000600
[FLOH] marine metagenome; water
62868
62793
-
Val
TAC
[ENA]
¢þ
>W1511564419
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1528
1453
-
Val
TAC
[ENA]
¡û
>W1511564421
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1267
1192
-
Val
TAC
[ENA]
¡û
>W1511564423
LADS01000051
Thermodesulfobacteriota
Desulfobulbaceae bacterium BRH_c16a [LADS]
1006
931
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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