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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.525895 (20 seq.)
>W1710946385
LORY01000001
Gammaproteobacteria
Vibrio vulnificus [LORY]
1844715
1844790
+
Asp
GTC
[ENA]
¡û
>W1710946391
LORY01000001
Gammaproteobacteria
Vibrio vulnificus [LORY]
1933595
1933670
+
Asp
GTC
[ENA]
¡û
>W1710947101
LOSI01000002
Gammaproteobacteria
Vibrio vulnificus [LOSI]
1853658
1853733
+
Asp
GTC
[ENA]
¡û
>W1710947305
LOSK01000001
Gammaproteobacteria
Vibrio harveyi [LOSK]
969985
970060
+
Asp
GTC
[ENA]
¡û
>C171108068
CP020453
Gammaproteobacteria
Vibrio coralliilyticus SNUTY-1 [CP020453, CP020454]
736175
736250
+
Asp
GTC
-
¡û
>W141104461
AVOH01000003
Gammaproteobacteria
Vibrio parahaemolyticus 10290 [AVOH]
1685
1610
-
Asp
GTC
[ENA]
¡û
>W141104471
AVOH01000007
Gammaproteobacteria
Vibrio parahaemolyticus 10290 [AVOH]
6273
6348
+
Asp
GTC
[ENA]
¡û
>WENV170779818
LZQR01001270
[LZQR] oil field metagenome; sample BH-FW-24 from oil reservoir
303
378
+
Asp
GTC
[ENA]
¢þ
>C191084246
CP032093
Gammaproteobacteria
Vibrio alfacsensis CAIM 1831 [CP032093, CP032094]
36212
36287
+
Asp
GTC
-
¡û
>W1511489019
JWSS01000001
Gammaproteobacteria
Vibrio parahaemolyticus 10329 [JWSS]
572942
573017
+
Asp
GTC
[ENA]
¡û
>W1511489047
JWSS01000001
Gammaproteobacteria
Vibrio parahaemolyticus 10329 [JWSS]
903665
903740
+
Asp
GTC
[ENA]
¡û
>W1511489053
JWSS01000001
Gammaproteobacteria
Vibrio parahaemolyticus 10329 [JWSS]
1009920
1009995
+
Asp
GTC
[ENA]
¡û
>C161065640
CP014043
Gammaproteobacteria
Vibrio mimicus FDAARGOS_112 [CP014042, CP014043]
546207
546132
-
Asp
GTC
-
¡û
>C161065699
CP014046
Gammaproteobacteria
Vibrio parahaemolyticus ATCC 17802 [CP014046]
1161205
1161280
+
Asp
GTC
-
¡û
>C161065715
CP014046
Gammaproteobacteria
Vibrio parahaemolyticus ATCC 17802 [CP014046]
1341812
1341887
+
Asp
GTC
-
¡û
>C161098989
CP016556
Gammaproteobacteria
Vibrio coralliilyticus 58 [CP016556, CP016557]
1414608
1414533
-
Asp
GTC
[Ensembl]
¡û
>W1610802328
LORY01000001
Gammaproteobacteria
Vibrio vulnificus [LORY]
1844715
1844790
+
Asp
GTC
[ENA]
¡û
>W1610802334
LORY01000001
Gammaproteobacteria
Vibrio vulnificus [LORY]
1933595
1933670
+
Asp
GTC
[ENA]
¡û
>W1610803103
LOSI01000002
Gammaproteobacteria
Vibrio vulnificus [LOSI]
1853658
1853733
+
Asp
GTC
[ENA]
¡û
>W1610803307
LOSK01000001
Gammaproteobacteria
Vibrio harveyi [LOSK]
969985
970060
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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