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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.5262 (54 seq.)
>W1710777587
LJBS01000027
Bacillota
Pediococcus acidilactici [LJBS]
30
123
+
Ser
GGA
[ENA]
¡û
>W1711210218
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
216
309
+
Ser
GGA
[ENA]
¡û
>W1711224705
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
726618
726525
-
Ser
GGA
[ENA]
¡û
>W1711236359
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
675905
675812
-
Ser
GGA
[ENA]
¡û
>W131239212
BANK01000055
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
445
352
-
Ser
GGA
[ENA]
¡û
>W131241974
BASH01000012
Bacillota
Lentilactobacillus otakiensis JCM 15040 [BASH]
14
107
+
Ser
GGA
[ENA]
¡û
>W1711685975
MSAT01000002
Bacillota
Lentilactobacillus parabuchneri [MSAT]
30244
30151
-
Ser
GGA
[ENA]
¡û
>W1711686090
MSAV01000001
Bacillota
Lentilactobacillus parabuchneri [MSAV]
94463
94370
-
Ser
GGA
[ENA]
¡û
>W1711686264
MSAY01000003
Bacillota
Lentilactobacillus parabuchneri [MSAY]
64051
63958
-
Ser
GGA
[ENA]
¡û
>W1711686610
MSBE01000001
Bacillota
Lentilactobacillus parabuchneri [MSBE]
95400
95307
-
Ser
GGA
[ENA]
¡û
>W1711686786
MSBH01000003
Bacillota
Lentilactobacillus parabuchneri [MSBH]
24149
24056
-
Ser
GGA
[ENA]
¡û
>C171036818
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
632931
632838
-
Ser
GGA
-
¡û
>C171119606
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1343243
1343150
-
Ser
GGA
-
¡û
>WENV180477967
OBZA01000002
[OBZA] human gut metagenome; faeces
320982
320889
-
Ser
GGA
[ENA]
¢þ
>WENV183762422
PPYE01275843
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
13597
13504
-
Ser
GGA
[ENA]
¢þ
>C191035364
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1280993
1280900
-
Ser
GGA
-
¡û
>C191106190
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
787251
787344
+
Ser
GGA
-
¡û
>C191135602
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1181151
1181058
-
Ser
GGA
-
¡û
>W09122540
ACGG01000115
Bacillota
Lentilactobacillus hilgardii subsp. gravesensis ATCC 27305 [ACGG]
11
104
+
Ser
GGA
[ENA]
¡û
>W09122597
ACGH01000126
Bacillota
Lentilactobacillus buchneri ATCC 11577 [ACGH]
13
106
+
Ser
GGA
[ENA]
¡û
>W1910181678
BJMF01000017
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
16690
16597
-
Ser
GGA
[ENA]
¡û
>W1910870907
NCWS01000060
Bacillota
Lentilactobacillus kefiri OG2 [NCWS]
168
261
+
Ser
GGA
[ENA]
¡û
>W1910871496
NCXD01000057
Bacillota
Lentilactobacillus kefiri KR [NCXD]
168
261
+
Ser
GGA
[ENA]
¡û
>W1910871768
NCXI01000519
Bacillota
Lentilactobacillus parakefiri OG2 [NCXI]
69
162
+
Ser
GGA
[ENA]
¡û
>W1911632294
PUFR01000079
Bacillota
Lentilactobacillus hilgardii ATCC 8290 [PUFR]
7719
7626
-
Ser
GGA
[ENA]
¡û
>W121011490
AGKB01000009
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
172729
172636
-
Ser
GGA
[ENA]
¡û
>W1610031472
AYYV01000089
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
69
162
+
Ser
GGA
[ENA]
¡û
>W1610033799
AZDF01000062
Bacillota
Lentilactobacillus hilgardii DSM 20176 = ATCC 8290 [AZDF]
42
135
+
Ser
GGA
[ENA]
¡û
>W1610034897
AZEB01000102
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
44
137
+
Ser
GGA
[ENA]
¡û
>W1610035471
AZEN01000246
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
70
163
+
Ser
GGA
[ENA]
¡û
>W1610036017
AZEY01000102
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
6970
6877
-
Ser
GGA
[ENA]
¡û
>W1610037389
AZFZ01000093
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
5908
5815
-
Ser
GGA
[ENA]
¡û
>W1610044284
BBAK01000012
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [BBAK]
23941
23848
-
Ser
GGA
[ENA]
¡û
>W1610044631
BBAR01000170
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
1524
1431
-
Ser
GGA
[ENA]
¡û
>W1610044702
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
685315
685222
-
Ser
GGA
[ENA]
¡û
>W1610044757
BBAU01000016
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
13
106
+
Ser
GGA
[ENA]
¡û
>W1610044811
BBAV01000013
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
13
106
+
Ser
GGA
[ENA]
¡û
>W1610528266
JQBB01000009
Bacillota
Pediococcus claussenii [JQBB]
29
122
+
Ser
GGA
[ENA]
¡û
>W1610997944
LXIA01000017
Bacillota
Lentilactobacillus parabuchneri [LXIA]
216
309
+
Ser
GGA
[ENA]
¡û
>W1611008669
LXUG01000011
Bacillota
Lentilactobacillus parabuchneri [LXUG]
726618
726525
-
Ser
GGA
[ENA]
¡û
>W1611014504
LYDQ01000011
Bacillota
Lentilactobacillus parabuchneri [LYDQ]
675905
675812
-
Ser
GGA
[ENA]
¡û
>W1710028399
AYYV01000089
Bacillota
Lentilactobacillus kefiri DSM 20587 = JCM 5818 [AYYV]
69
162
+
Ser
GGA
[ENA]
¡û
>W1710031972
AZEA01000024
Bacillota
Lentilactobacillus sunkii DSM 19904 [AZEA]
43
136
+
Ser
GGA
[ENA]
¡û
>W1710032024
AZEB01000102
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [AZEB]
44
137
+
Ser
GGA
[ENA]
¡û
>W1710032510
AZEN01000246
Bacillota
Lentilactobacillus parakefiri DSM 10551 [AZEN]
70
163
+
Ser
GGA
[ENA]
¡û
>W1710033056
AZEY01000102
Bacillota
Lentilactobacillus diolivorans DSM 14421 [AZEY]
6970
6877
-
Ser
GGA
[ENA]
¡û
>W1710034428
AZFZ01000093
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [AZFZ]
5908
5815
-
Ser
GGA
[ENA]
¡û
>W1710034952
AZGK01000001
Bacillota
Lentilactobacillus parabuchneri DSM 5707 = NBRC 107865 [AZGK]
41
134
+
Ser
GGA
[ENA]
¡û
>W1710041444
BBAK01000012
Bacillota
Fructilactobacillus florum DSM 22689 = JCM 16035 [BBAK]
23941
23848
-
Ser
GGA
[ENA]
¡û
>W1710041729
BBAR01000170
Bacillota
Lentilactobacillus parafarraginis DSM 18390 = JCM 14109 [BBAR]
1524
1431
-
Ser
GGA
[ENA]
¡û
>W1710041800
BBAT01000001
Bacillota
Lentilactobacillus otakiensis DSM 19908 = JCM 15040 [BBAT]
685315
685222
-
Ser
GGA
[ENA]
¡û
>W1710041855
BBAU01000016
Bacillota
Lentilactobacillus kisonensis DSM 19906 = JCM 15041 [BBAU]
13
106
+
Ser
GGA
[ENA]
¡û
>W1710041909
BBAV01000013
Bacillota
Lentilactobacillus rapi DSM 19907 = JCM 15042 [BBAV]
13
106
+
Ser
GGA
[ENA]
¡û
>W1710629856
JQBB01000009
Bacillota
Pediococcus claussenii [JQBB]
29
122
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK