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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52692 (27 seq.)
>W1711421634
MHZH01000124
Gammaproteobacteria
Pseudomonadales bacterium GWC1_66_9 [MHZH]
5042
5131
+
Ser
TGA
[ENA]
¡û
>C171044808
CP015992
Gammaproteobacteria
Pseudomonas sp. TCU-HL1 [CP015992]
2692654
2692743
+
Ser
TGA
-
¡û
>W131231119
AUIE01000048
Gammaproteobacteria
Pseudomonas resinovorans DSM 21078 [AUIE]
15343
15432
+
Ser
TGA
[ENA]
¡û
>w002054
AAAU03000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAAU]
875086
874995
-
Ser
TGA
[ENA]
¡û
>WENV170966857
MTEY01011737
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
91869
91780
-
Ser
TGA
[ENA]
¢þ
>C181011115
CP011835
Gammaproteobacteria
Azotobacter chroococcum B3 [CP011835]
2307107
2307018
-
Ser
TGA
-
¡û
>W09102092
AAHH01000001
Gammaproteobacteria
Azotobacter vinelandii AvOP [AAHH]
875085
874996
-
Ser
TGA
[ENA]
¡û
>C191092010
CP032616
Gammaproteobacteria
Pseudomonas sp. DY-1 [CP032616]
1447106
1447017
-
Ser
TGA
-
¡û
>W1910810352
MUJY01000047
Gammaproteobacteria
Pseudomonas sp. PIC25 [MUJY]
77622
77533
-
Ser
TGA
[ENA]
¡û
>W1910810784
MUNN01000129
Gammaproteobacteria
Pseudomonas indica PIC105 [MUNN]
74221
74310
+
Ser
TGA
[ENA]
¡û
>C09100889
CP001157
Gammaproteobacteria
Azotobacter vinelandii DJ DJ; ATCC BAA-1303 [CP001157]
2505285
2505374
+
Ser
TGA
[Ensembl]
¡û
>C151001264
AP013068
Gammaproteobacteria
Pseudomonas resinovorans NBRC 106553 [AP013068]
2783125
2783214
+
Ser
TGA
[Ensembl]
¡û
>C151068426
CP010415
Gammaproteobacteria
Azotobacter chroococcum NCIMB 8003 [CP010415]
2238244
2238333
+
Ser
TGA
[Ensembl]
¡û
>W1511530369
JYKO01000023
Gammaproteobacteria
Pseudomonas sp. LFM046 [JYKO]
164883
164794
-
Ser
TGA
[ENA]
¡û
>W1610070295
BCTD01000021
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
48407
48318
-
Ser
TGA
[ENA]
¡û
>C131014898
CP005094
Gammaproteobacteria
Azotobacter vinelandii CA [CP005094]
2505309
2505398
+
Ser
TGA
[Ensembl]
¡û
>C131014962
CP005095
Gammaproteobacteria
Azotobacter vinelandii CA6 [CP005095]
2505297
2505386
+
Ser
TGA
[Ensembl]
¡û
>W1710067668
BCTD01000021
Gammaproteobacteria
Azotobacter vinelandii NBRC 13581 [BCTD]
48407
48318
-
Ser
TGA
[ENA]
¡û
>W1710075929
BDAC01000002
Gammaproteobacteria
Pseudomonas indica NBRC 103045 [BDAC]
78687
78598
-
Ser
TGA
[ENA]
¡û
>W1710084491
BDMA01000084
Gammaproteobacteria
Pseudomonas resinovorans [BDMA]
18320
18409
+
Ser
TGA
[ENA]
¡û
>W1710519909
FNFD01000005
Gammaproteobacteria
Pseudomonas indica [FNFD]
1238
1327
+
Ser
TGA
[ENA]
¡û
>W1710541747
FNYO01000026
Gammaproteobacteria
Azotobacter beijerinckii [FNYO]
36149
36060
-
Ser
TGA
[ENA]
¡û
>W1710541866
FNYQ01000133
Gammaproteobacteria
Azotobacter beijerinckii [FNYQ]
8966
8877
-
Ser
TGA
[ENA]
¡û
>W1710550542
FOFJ01000021
Gammaproteobacteria
Azotobacter beijerinckii [FOFJ]
25786
25875
+
Ser
TGA
[ENA]
¡û
>W1710556670
FOKJ01000063
Gammaproteobacteria
Azotobacter beijerinckii [FOKJ]
4263
4174
-
Ser
TGA
[ENA]
¡û
>W1710567641
FOSX01000029
Gammaproteobacteria
Azotobacter beijerinckii [FOSX]
25423
25512
+
Ser
TGA
[ENA]
¡û
>W1710581995
FPKM01000039
Gammaproteobacteria
Azotobacter vinelandii [FPKM]
8761
8672
-
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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